Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_E22
         (358 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||...    26   1.5  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    26   2.0  
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    25   4.6  
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb...    25   4.6  

>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 948

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
 Frame = +2

Query: 2   KQLRIETSEMILTITVLSALVTQAS--LTPLSNLTVAFINY--EELSPLNNINSYEQLYD 169
           KQ     S+ I  + + S +    S  +  L+  T A+I Y  EE+ PLN  N Y    D
Sbjct: 312 KQKVFLQSKQIFCVPINSLMANSDSVDILELTRNTDAYIWYSVEEIDPLNTYNIYYTNED 371

Query: 170 SVVVGD 187
           + +V D
Sbjct: 372 TSIVLD 377


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 44  TVLSALVTQASLTPLSNLTVAFINYEELSPLNNINS 151
           +V S   T AS TPLS++          +PL ++NS
Sbjct: 443 SVNSTTATSASSTPLSSVNSTTATSASSTPLTSVNS 478



 Score = 25.4 bits (53), Expect = 2.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 53  SALVTQASLTPLSNLTVAFINYEELSPLNNINS 151
           S   T AS TPLS++          +PL+++NS
Sbjct: 430 STTATSASSTPLSSVNSTTATSASSTPLSSVNS 462



 Score = 24.6 bits (51), Expect = 4.6
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 44  TVLSALVTQASLTPLSNLTVAFINYEELSPLNNINS 151
           +V S   T AS TPL+++          +PL ++NS
Sbjct: 345 SVNSTTATSASSTPLTSVNSTTATSASSTPLTSVNS 380



 Score = 24.6 bits (51), Expect = 4.6
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 44  TVLSALVTQASLTPLSNLTVAFINYEELSPLNNINS 151
           +V S   T AS TPL+++          +PL ++NS
Sbjct: 459 SVNSTTATSASSTPLTSVNSTTATSASSTPLTSVNS 494


>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 471

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 110 INYEELSPLNNINSYEQLYDSVV 178
           +N  ++  L +INS E LYDS V
Sbjct: 21  LNDAKIKSLTSINSAEYLYDSFV 43


>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +3

Query: 102 LHLLTTKSFRHSITSTLTN 158
           + +L  ++ RHS+TST+TN
Sbjct: 284 IEVLYMENSRHSVTSTITN 302


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,293,200
Number of Sequences: 5004
Number of extensions: 20736
Number of successful extensions: 81
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)