Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_E22
         (358 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0908 + 22507565-22507810,22507925-22508872,22509314-225103...    27   4.3  
05_01_0150 + 1000613-1001275                                           27   4.3  
07_03_0831 - 21810002-21810319,21810423-21810573,21810660-218108...    27   5.7  

>07_03_0908 +
           22507565-22507810,22507925-22508872,22509314-22510337,
           22510425-22510477
          Length = 756

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -2

Query: 354 GK*SLTMFVPNMFHSL*AYSTMFLLPSE 271
           GK  LT FVPN  H L   STM +L ++
Sbjct: 187 GKYRLTEFVPNHNHQLATASTMHMLKAK 214


>05_01_0150 + 1000613-1001275
          Length = 220

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = -1

Query: 214 EGLHYCSLVVADNYTVVQLFVRVDVIEWRKLFVVNKCNREVA*RCKGRLR 65
           EG +YCS  V D+Y+  Q+++R      +K  V     R +A  C GR+R
Sbjct: 79  EGWYYCSPRVVDSYSCRQIYLRSYTFSKKKETVP---ERTMA--CLGRVR 123


>07_03_0831 -
           21810002-21810319,21810423-21810573,21810660-21810897,
           21811011-21811221,21811336-21811559,21811696-21811806,
           21813265-21813636,21813810-21814782
          Length = 865

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +2

Query: 275 EGKRNIVEYAYKLWN 319
           EG  NIV YA++LWN
Sbjct: 752 EGSLNIVGYAWQLWN 766


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,204,483
Number of Sequences: 37544
Number of extensions: 128162
Number of successful extensions: 346
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 542368620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)