Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_E21
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.07c |||prefoldin subunit 3|Schizosaccharomyces pombe|chr...    29   0.41 
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    27   2.2  
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa...    27   2.2  
SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe...    26   3.8  
SPCC1682.13 |||SWIRM domain protein|Schizosaccharomyces pombe|ch...    26   3.8  
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    25   6.6  
SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces pom...    25   8.8  
SPAC3C7.14c |obr1|apt1, uhp1|ubiquitinated histone-like protein ...    25   8.8  
SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|...    25   8.8  
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb...    25   8.8  
SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces po...    25   8.8  

>SPAC3H8.07c |||prefoldin subunit 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 169

 Score = 29.5 bits (63), Expect = 0.41
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +3

Query: 315 QNVEFLHDIRAKSASVFYEADEELKAKKHEDFAKNVY 425
           Q+V+FL + +  S +V YE ++ L AK   +   NVY
Sbjct: 65  QSVQFLKERQGDSFTVTYELNDTLNAKAEVEAKDNVY 101


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1822

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 13/56 (23%), Positives = 27/56 (48%)
 Frame = +3

Query: 429  DMLEKIHAIIKKNNGHIAAGKLTWGDFVFTGMFEYLKMMLQIPDLEVKYPAFQETY 596
            ++   +  +IK+      +   T+  +VF  +F Y  +++   DLEV+  A Q  +
Sbjct: 1375 EVYSSLSTMIKEGLSSKPSVNETFSKYVFPVLFAYYDIIMSAEDLEVRSRALQNLF 1430


>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +3

Query: 507 FVFTGMFEYLKMMLQIPDLEVKYPAFQETYQQCI 608
           F+   +FE ++  L++P  + K   F+  Y+ CI
Sbjct: 676 FIVDDVFEDMESNLRVPTEDAKIKRFKSDYRSCI 709


>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 746

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +1

Query: 64  STISRARPSVRAVACFSLTVAKTSKTTEYYLLIGQ 168
           S  ++A PS RA+   S  ++  S  TEY +L+G+
Sbjct: 520 SIFTKAFPSNRAIHPMSKLLSTNSADTEYPILLGK 554


>SPCC1682.13 |||SWIRM domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 272

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 465 SSL*WRESSPAYRG-IRFSRSPHVSSPSVLHQPRRTPMR 352
           SS+  R+SSP+Y G +R +     SSPS +   RR   R
Sbjct: 107 SSVSSRDSSPSYSGALRSAERSISSSPSTIEARRRKSAR 145


>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +3

Query: 324 EFLHDIRAKSA-SVFYEADEELKAKKHEDFAKNVYPDMLEKIHAIIKKN 467
           EF  D  A S  +V Y +  E+   KH D A  V+P + + I  I K N
Sbjct: 714 EFYKDDYATSLPNVVYTS--EVLLSKHNDSAFKVWPKLRKNIRKITKPN 760


>SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 236

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 15/68 (22%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = +3

Query: 249 CRYLGRKYGIAGANEEESFEIDQNVEFLHDIRAKSASVFYEADEEL--KAKKHEDFAKNV 422
           C Y G KY I G +E  ++E+      +  I     +  +  +E       ++++  + +
Sbjct: 112 CLYYGTKYAIEGISEALTWEMQSIGVKVKIIEPGFTATEFRVEEGAGKHYAEYDNLKQKL 171

Query: 423 YPDMLEKI 446
           Y D+L K+
Sbjct: 172 YEDLLPKL 179


>SPAC3C7.14c |obr1|apt1, uhp1|ubiquitinated histone-like protein
           Uhp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 202

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 408 FAKNVYPDMLEKIHAIIKKNNGHIAAGKLTWGD-FVF 515
           F + + P++LEK+HA  K N   +    LT  D F+F
Sbjct: 41  FPETLSPEILEKMHAAPKPNYPVVTLDVLTQYDAFLF 77


>SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 182

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 431 YAGEDSRHHKEE*RTHRCWE 490
           Y     RHHKE  ++H  WE
Sbjct: 47  YPPPPPRHHKEHKKSHHHWE 66


>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -1

Query: 578 WIFDLKVWYLEHH 540
           ++ DLK W+L+HH
Sbjct: 298 YLTDLKTWHLDHH 310


>SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 236

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 15/68 (22%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = +3

Query: 249 CRYLGRKYGIAGANEEESFEIDQNVEFLHDIRAKSASVFYEADEEL--KAKKHEDFAKNV 422
           C Y G KY I G +E  ++E+      +  I     +  +  +E       ++++  + +
Sbjct: 112 CLYYGTKYAIEGISEALTWEMQSIGVKVKIIEPGFTATEFRVEEGAGKHYAEYDNLKQKL 171

Query: 423 YPDMLEKI 446
           Y D+L K+
Sbjct: 172 YEDLLPKL 179


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,554,071
Number of Sequences: 5004
Number of extensions: 53519
Number of successful extensions: 182
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)