Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_E20
         (427 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    27   1.6  
SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyce...    25   4.9  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    25   6.5  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    24   8.6  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    24   8.6  
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom...    24   8.6  

>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 255 ELQAYANLYLKRSYEYLLSASYFN 326
           +L  Y N++L  SY+YLLS S  N
Sbjct: 90  DLLEYLNIFLPSSYKYLLSNSGAN 113


>SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +3

Query: 201 GKCNAQYGEYNDYSHVAGELQAYANLYLKRSYEYLLSASYFN 326
           G   A Y  + DYSHV         LY+  S   L+S ++FN
Sbjct: 217 GSTTAGYHGWFDYSHVISRFNEVPALYV-ISGVILVSIAFFN 257


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 12/47 (25%), Positives = 26/47 (55%)
 Frame = +2

Query: 266 LRQPLPQAVIRISAICFIFQQITK*IELALVKCSGSYPMKLGRRGSI 406
           L +PLP+ + +++   FI  ++ K ++L     +GS+ MK     ++
Sbjct: 835 LSKPLPRLLNQVNYYQFIRNKLLKDVKLHPYSPTGSFVMKQSENDNV 881


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
 Frame = +3

Query: 213 AQYGEYNDYSHVAGELQAYANLYL----KRSYEYLLSASYFNKLQNKSSW 350
           +QY  Y+  SHV   L+ Y  L L    +   + L+S  +F    N+S++
Sbjct: 133 SQYANYSSSSHVLWHLRNYHYLNLDQDIQEENDSLISPFFFRISPNESAY 182


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -2

Query: 261 EVRQRRGCSHCIRRIARYTCPETKLSL*THIQLSLL 154
           +V +R  C +C R+I +  C E  + +   +QL L+
Sbjct: 83  QVSRRDTCFYCSRKIIKCICNEEHVGI-ESVQLKLI 117


>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
           Msp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 903

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 267 RPEVRQRRGCSHCIRRIARYTCPETKLS 184
           R  V + R C H   + A+YTCPE  L+
Sbjct: 793 RISVLKSRACKH---KEAKYTCPEIFLN 817


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,608,696
Number of Sequences: 5004
Number of extensions: 27175
Number of successful extensions: 86
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)