Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_E20
         (427 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0422 - 3084940-3087072                                           29   2.1  
06_03_1065 - 27316270-27317032,27317062-27317189                       27   4.8  
03_05_0883 + 28483429-28484385,28485090-28485398                       27   6.3  

>02_01_0422 - 3084940-3087072
          Length = 710

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 18/73 (24%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
 Frame = +2

Query: 182 NDNFVSGQV*RAIRRIQ*LQPRRWRTSGLRQPLPQAVIRISAICFIFQQIT---K*IELA 352
           ++N +SG++ +A+  I  L+  +   +   +  P  V   + +CF ++ +T   K + L 
Sbjct: 494 SNNSLSGEIPQALMEIPMLKSDKIADNSDPRAFPFPVYAGACLCFQYRTVTAFPKMLNLG 553

Query: 353 LVKCSGSYPMKLG 391
             K +G+ PM++G
Sbjct: 554 NNKFTGAIPMEIG 566


>06_03_1065 - 27316270-27317032,27317062-27317189
          Length = 296

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 215 AIRRIQ*LQPRRWRTSGLRQPLPQAVIRISAICF 316
           A RR +  + RRWR  G+ Q LP A +  +  CF
Sbjct: 66  AARRRRRRRQRRWRHQGVAQLLPGAPVDHALPCF 99


>03_05_0883 + 28483429-28484385,28485090-28485398
          Length = 421

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 255 RQRRGCSHCIRRIARYTCP 199
           R  R C  C+RR AR+ CP
Sbjct: 15  RTARACDGCMRRRARWHCP 33


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,318,522
Number of Sequences: 37544
Number of extensions: 173717
Number of successful extensions: 429
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)