Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_E20
         (427 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58496| Best HMM Match : Ferritin (HMM E-Value=0.0012)               28   2.8  
SB_7503| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   2.8  
SB_197| Best HMM Match : LISCH7 (HMM E-Value=1.3)                      28   3.7  
SB_52619| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.9  
SB_39831| Best HMM Match : Kazal_1 (HMM E-Value=2.4e-19)               27   6.5  
SB_27751| Best HMM Match : Laminin_G_2 (HMM E-Value=1e-06)             27   8.6  
SB_31301| Best HMM Match : EGF (HMM E-Value=0.0037)                    27   8.6  

>SB_58496| Best HMM Match : Ferritin (HMM E-Value=0.0012)
          Length = 126

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 337 INRAGFSKMFRKLSDEAWE 393
           IN  GF+K F+K S E WE
Sbjct: 64  INLPGFNKFFKKASKEEWE 82


>SB_7503| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 203

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 337 INRAGFSKMFRKLSDEAWE 393
           IN  GF+K F+K S E WE
Sbjct: 38  INLPGFNKFFKKASKEEWE 56


>SB_197| Best HMM Match : LISCH7 (HMM E-Value=1.3)
          Length = 120

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 14/37 (37%), Positives = 15/37 (40%)
 Frame = -3

Query: 188 CRCRHTFSCHSFVTTVTCVNARQSQETSYCECDFLHC 78
           CRC  T  C  F T   C  AR     + C C   HC
Sbjct: 35  CRCFAT-RCRCFATRCHCFAARCRCFAARCRCFAAHC 70



 Score = 27.5 bits (58), Expect = 4.9
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = -3

Query: 188 CRCRHTFSCHSFVTTVTCVNARQSQETSYCECDFLH 81
           CRC  T  CH F     C  AR     ++C C   H
Sbjct: 42  CRCFAT-RCHCFAARCRCFAARCRCFAAHCRCFAAH 76


>SB_52619| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 492

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = +3

Query: 225 EYNDYSHVAGELQ-AYANLYLKRSYEYLLSASYFNKLQNKS 344
           +YN  S V   +Q +Y +LY+  S+ YL+S  ++N+L N +
Sbjct: 426 QYNLRSSVHNLIQPSYQSLYMHNSFYYLIS-HFWNQLPNSA 465


>SB_39831| Best HMM Match : Kazal_1 (HMM E-Value=2.4e-19)
          Length = 173

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = -3

Query: 185 RCRHTFSCHSFVTTVTCVNARQSQETSYCECD 90
           +CR    C  F     CV  R++ E   C CD
Sbjct: 135 KCRPNQECKVFFQRARCVLKRKTCEEMKCRCD 166


>SB_27751| Best HMM Match : Laminin_G_2 (HMM E-Value=1e-06)
          Length = 255

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -3

Query: 206 LAQRQSCRCRHTFSCHSFVTTVTCVNARQSQETSYCE 96
           +++ QS RCR+   C   + T  C       E  YC+
Sbjct: 217 ISRTQSSRCRNDGKCIDHIKTFECDCEGTGYEGKYCD 253


>SB_31301| Best HMM Match : EGF (HMM E-Value=0.0037)
          Length = 76

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -3

Query: 206 LAQRQSCRCRHTFSCHSFVTTVTCVNARQSQETSYCE 96
           +++ QS RCR+   C   + T  C       E  YC+
Sbjct: 38  ISRTQSSRCRNDGKCIDHIKTFECDCEGTGYEGKYCD 74


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,346,147
Number of Sequences: 59808
Number of extensions: 220011
Number of successful extensions: 599
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 814166562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)