Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_E20
         (427 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53149-1|AAD31546.1|  328|Caenorhabditis elegans Prion-like-(q/n...    34   0.037
AL034364-1|CAA22251.1|  272|Caenorhabditis elegans Hypothetical ...    27   4.3  
Z99283-1|CAB16536.2|  414|Caenorhabditis elegans Hypothetical pr...    27   7.4  
U40946-3|AAO91681.1|  851|Caenorhabditis elegans Hypothetical pr...    27   7.4  
AF300704-1|AAG24400.1|  622|Caenorhabditis elegans incenp-like p...    27   7.4  
AF098996-1|AAM34815.1|  523|Caenorhabditis elegans Hypothetical ...    27   7.4  
AC025716-5|AAK39616.1|  622|Caenorhabditis elegans Incenp homolo...    27   7.4  
Z70782-5|CAA94843.1|  322|Caenorhabditis elegans Hypothetical pr...    26   9.8  

>U53149-1|AAD31546.1|  328|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 16
           protein.
          Length = 328

 Score = 34.3 bits (75), Expect = 0.037
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
 Frame = -3

Query: 200 QRQSCRC---RHTFSCHSFVT--TVTCVNARQSQETSYCECDFLHCSKAI 66
           +RQ+C+C   + + SC+S +   T TC N +QS   S C C     SK++
Sbjct: 25  KRQNCKCSPPQSSCSCNSAIQSQTCTCHNTQQSTSASNCNCVLKSNSKSV 74


>AL034364-1|CAA22251.1|  272|Caenorhabditis elegans Hypothetical
           protein W06D4.3 protein.
          Length = 272

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -2

Query: 312 QIADIRMTA*GRGWRRPEVRQRRGCSHCIRRIARYTCPETKLSL*THI 169
           +I D    A G+  ++    Q+R  SHCI+++  YT  E+ + L  H+
Sbjct: 120 KILDAYSIACGKIGQKERQLQKRTRSHCIKKMRMYTADES-VELNNHV 166


>Z99283-1|CAB16536.2|  414|Caenorhabditis elegans Hypothetical
           protein Y70C5C.2 protein.
          Length = 414

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +2

Query: 26  FDGSRYKFNSINTQSPWNN 82
           FDGS + FN IN  SP  N
Sbjct: 228 FDGSPWNFNQINPASPKKN 246


>U40946-3|AAO91681.1|  851|Caenorhabditis elegans Hypothetical
           protein W05H9.2 protein.
          Length = 851

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 313 LHISTNYKINRAGFSKMFRKLSDEAWEKGIDLIKHV 420
           L IS NY   RA  +   + L+D+ W K  +L K +
Sbjct: 106 LFISKNYAEKRAQLADNIQNLTDDLWSKVPELNKRL 141


>AF300704-1|AAG24400.1|  622|Caenorhabditis elegans incenp-like
           protein ICP-1 protein.
          Length = 622

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -3

Query: 422 VTCLIKSIPFSQASSDNFLNILLKPARFIL*FVEI*SR 309
           ++ + + +   Q S++  LN +LKP R    FVE+ SR
Sbjct: 52  MSSITEELATPQFSAEQLLNAVLKPGRIDAEFVELISR 89


>AF098996-1|AAM34815.1|  523|Caenorhabditis elegans Hypothetical
           protein T11F1.7 protein.
          Length = 523

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +1

Query: 310 LLHISTNYKINRAGFSKM 363
           L+HI+ N+K+ R GF K+
Sbjct: 268 LMHIANNFKMKRLGFPKL 285


>AC025716-5|AAK39616.1|  622|Caenorhabditis elegans Incenp homolog
           protein 1 protein.
          Length = 622

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -3

Query: 422 VTCLIKSIPFSQASSDNFLNILLKPARFIL*FVEI*SR 309
           ++ + + +   Q S++  LN +LKP R    FVE+ SR
Sbjct: 52  MSSITEELATPQFSAEQLLNAVLKPGRIDAEFVELISR 89


>Z70782-5|CAA94843.1|  322|Caenorhabditis elegans Hypothetical
           protein R04B5.7 protein.
          Length = 322

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 219 YGEYNDYSHVAGELQAYANLYLKRSYEYLLSASYFNKLQNKSSW 350
           Y +  DY H A EL  ++  YL      L ++S    LQ++S+W
Sbjct: 195 YLQQMDYKHHAQELYNFSTDYLLTLPPPLGNSSNLATLQSQSNW 238


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,992,813
Number of Sequences: 27780
Number of extensions: 156607
Number of successful extensions: 422
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)