Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_E20
         (427 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g29740.1 68414.m03636 leucine-rich repeat family protein / pr...    29   1.7  
At1g29730.1 68414.m03634 leucine-rich repeat transmembrane prote...    27   7.0  

>At1g29740.1 68414.m03636 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 1049

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +2

Query: 179 YNDNFVSGQV*RAIRRIQ*LQPRRWRTSGLRQPLPQAVIRI 301
           ++DN ++G +   I  +  LQ      SGL+ P+P ++ R+
Sbjct: 225 FSDNRLNGSIPEFIGNLSKLQRLELYASGLKDPIPYSIFRL 265


>At1g29730.1 68414.m03634 leucine-rich repeat transmembrane protein
           kinase, putative contains Pfam domains, PF00560: Leucine
           Rich Repeat and PF00069: Protein kinase domain
          Length = 940

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +2

Query: 182 NDNFVSGQV*RAIRRIQ*LQPRRWRTSGLRQPLPQAVIRI 301
           +DN ++G +   I ++  LQ      SGLR P+P ++  +
Sbjct: 226 SDNRLNGSIPEFIGKLPKLQRLELYASGLRGPIPDSIFHL 265


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,350,268
Number of Sequences: 28952
Number of extensions: 141769
Number of successful extensions: 296
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 665183504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)