Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_E19
(404 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.20
SB_48089| Best HMM Match : DUF638 (HMM E-Value=3.3) 30 0.62
SB_54333| Best HMM Match : Glyco_hydro_39 (HMM E-Value=0) 28 2.5
SB_34654| Best HMM Match : zf-C2H2 (HMM E-Value=8e-31) 28 3.3
SB_18269| Best HMM Match : CUB (HMM E-Value=7.4e-37) 28 3.3
SB_46909| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00039) 28 3.3
SB_33008| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.4
SB_47642| Best HMM Match : RVT_1 (HMM E-Value=6.7e-21) 27 5.8
SB_30085| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.7
>SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1778
Score = 31.9 bits (69), Expect = 0.20
Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 2/97 (2%)
Frame = +1
Query: 106 EDQPEQWANSRVRRQAGALTINSDGTSGAMVKVPITGNENHKLSALGSVDLTNQMKLGAA 285
+++P V+ + TIN + +K + GN + L A S N K G
Sbjct: 651 DNEPVTETIDSVKEEDSKATINCIRNNNTYIKQSVEGNNSFSLDASSS---ENVRKEGDK 707
Query: 286 TAGLAY-DNVNGHGATLT-KTHIPGFGDKMTAAGKVN 390
++Y DN+N A T + IPG K + KVN
Sbjct: 708 DVVISYSDNMNNSKAANTDQFGIPGSDSKTGSDSKVN 744
>SB_48089| Best HMM Match : DUF638 (HMM E-Value=3.3)
Length = 811
Score = 30.3 bits (65), Expect = 0.62
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Frame = -3
Query: 183 GTIRVDSESTRL---PAHPRVSPLLRLILILFD---VVTRLFNKHVTAV 55
G + V+ + RL HPR SPLL+L+ D VV LF +HV AV
Sbjct: 614 GKVAVEEKRPRLLRSEFHPRRSPLLQLLSNTPDVHVVVVELFQRHVHAV 662
>SB_54333| Best HMM Match : Glyco_hydro_39 (HMM E-Value=0)
Length = 1325
Score = 28.3 bits (60), Expect = 2.5
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -3
Query: 210 YGYLDHSTGGTIRVDSESTRLPAHPRVSPL 121
Y YL H T T + DS STR+ RV L
Sbjct: 935 YAYLHHDTRTTCKYDSYSTRIYTATRVRQL 964
>SB_34654| Best HMM Match : zf-C2H2 (HMM E-Value=8e-31)
Length = 624
Score = 27.9 bits (59), Expect = 3.3
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 2/96 (2%)
Frame = +1
Query: 76 EEPGYYIEQYE--DQPEQWANSRVRRQAGALTINSDGTSGAMVKVPITGNENHKLSALGS 249
E Y E+YE D AN QA + N+ ++G ++ + ++G + K+ A S
Sbjct: 113 ERSEYGGERYETSDFQRSVANRYKELQADSWKKNNVTSAGGLLSLDLSGEGHFKVHANAS 172
Query: 250 VDLTNQMKLGAATAGLAYDNVNGHGATLTKTHIPGF 357
+ + Y + A L HIPGF
Sbjct: 173 TAIPAAETTDWPQENI-YSTIQYQEAPLPPAHIPGF 207
>SB_18269| Best HMM Match : CUB (HMM E-Value=7.4e-37)
Length = 1655
Score = 27.9 bits (59), Expect = 3.3
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = +1
Query: 1 HSKMFAKLFLVSVLLVGVNSRYVLVEEPGYYIEQYEDQPEQWANSRVRRQAGALTINSDG 180
HS + L L L+ GV + +++ Y E ++ E W + R+ + AGAL++ S
Sbjct: 1039 HSYLLTNLALADFLM-GVYMLLIAIKDVEYQGEYFKHDIE-WRSGRLCQFAGALSLTSSE 1096
Query: 181 TS 186
S
Sbjct: 1097 VS 1098
>SB_46909| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00039)
Length = 685
Score = 27.9 bits (59), Expect = 3.3
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -1
Query: 266 WLVRSTEPRALSLWFSLPVMGTLTIAPEVPSELIV 162
W+V ++EP LS + ++ T +I P P I+
Sbjct: 472 WVVETSEPLQLSTTIMISIITTTSILPSFPPTAII 506
>SB_33008| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1016
Score = 27.5 bits (58), Expect = 4.4
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -3
Query: 252 D*TKSTELVVFIASYGYLDHSTGGTIRVDSES 157
D +K+ E + IA++ L+H+ G I DSES
Sbjct: 800 DLSKALEDIKNIAAFNVLEHAKSGEIESDSES 831
>SB_47642| Best HMM Match : RVT_1 (HMM E-Value=6.7e-21)
Length = 1336
Score = 27.1 bits (57), Expect = 5.8
Identities = 22/87 (25%), Positives = 37/87 (42%)
Frame = +1
Query: 58 SRYVLVEEPGYYIEQYEDQPEQWANSRVRRQAGALTINSDGTSGAMVKVPITGNENHKLS 237
+R + EP ++ EDQ E A+S +R +AG +D G + + T N NH
Sbjct: 1183 ARKAQINEPPSPLKVQEDQRETEAHSPIRTRAGREATCNDHLKGCVNQA--TCN-NHLKG 1239
Query: 238 ALGSVDLTNQMKLGAATAGLAYDNVNG 318
+ + +K G D++ G
Sbjct: 1240 CVNQATCNDHLK-GCVNQATCNDHLKG 1265
>SB_30085| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 472
Score = 26.6 bits (56), Expect = 7.7
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +1
Query: 70 LVEEPGYYIEQYEDQPEQW 126
L EEPGYYIE + PE W
Sbjct: 210 LDEEPGYYIE--KKAPESW 226
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,167,461
Number of Sequences: 59808
Number of extensions: 234822
Number of successful extensions: 465
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 727815563
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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