Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_E19
         (404 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g43990.2 68418.m05382 SET domain-containing protein identical...    28   2.7  
At5g43990.1 68418.m05383 SET domain-containing protein identical...    28   2.7  
At1g55860.1 68414.m06406 ubiquitin-protein ligase 1 (UPL1) nearl...    27   3.6  
At5g64360.3 68418.m08085 DNAJ heat shock N-terminal domain-conta...    27   4.8  
At5g64360.2 68418.m08084 DNAJ heat shock N-terminal domain-conta...    27   4.8  
At5g64360.1 68418.m08083 DNAJ heat shock N-terminal domain-conta...    27   4.8  
At3g57030.1 68416.m06348 strictosidine synthase family protein s...    27   4.8  
At5g55530.3 68418.m06918 C2 domain-containing protein low simila...    27   6.3  
At5g55530.2 68418.m06917 C2 domain-containing protein low simila...    27   6.3  
At5g55530.1 68418.m06916 C2 domain-containing protein low simila...    27   6.3  
At5g65160.1 68418.m08195 tetratricopeptide repeat (TPR)-containi...    26   8.3  
At5g39910.1 68418.m04840 glycoside hydrolase family 28 protein /...    26   8.3  
At1g56350.1 68414.m06479 peptide chain release factor, putative ...    26   8.3  

>At5g43990.2 68418.m05382 SET domain-containing protein identical to
           SET domain protein SUVR2 [Arabidopsis thaliana]
           GI:15290521; contains Pfam profiles PF00856: SET domain,
           PF05033: Pre-SET motif; identical to cDNA SET domain
           protein SUVR2 GI:15290520
          Length = 740

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 18/76 (23%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
 Frame = +1

Query: 127 ANSRVRRQAGALTINSDGTSGAMVKVPITGNENHKLSALGSVDLTNQMKLGAATAGLAYD 306
           +N  V  +AG     +DGT+  +    +    +HKL+A  +++    ++L ++ +G    
Sbjct: 219 SNGHVEEKAGETVSTADGTTNDISPTTVARFSDHKLAA--TIEEPPALELASSASGEVKI 276

Query: 307 NVNGHGAT-LTKTHIP 351
           N++   AT  +  H+P
Sbjct: 277 NLSFAPATGGSNPHLP 292


>At5g43990.1 68418.m05383 SET domain-containing protein identical to
           SET domain protein SUVR2 [Arabidopsis thaliana]
           GI:15290521; contains Pfam profiles PF00856: SET domain,
           PF05033: Pre-SET motif; identical to cDNA SET domain
           protein SUVR2 GI:15290520
          Length = 717

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 18/76 (23%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
 Frame = +1

Query: 127 ANSRVRRQAGALTINSDGTSGAMVKVPITGNENHKLSALGSVDLTNQMKLGAATAGLAYD 306
           +N  V  +AG     +DGT+  +    +    +HKL+A  +++    ++L ++ +G    
Sbjct: 196 SNGHVEEKAGETVSTADGTTNDISPTTVARFSDHKLAA--TIEEPPALELASSASGEVKI 253

Query: 307 NVNGHGAT-LTKTHIP 351
           N++   AT  +  H+P
Sbjct: 254 NLSFAPATGGSNPHLP 269


>At1g55860.1 68414.m06406 ubiquitin-protein ligase 1 (UPL1) nearly
            identical to ubiquitin-protein ligase 1 [Arabidopsis
            thaliana] GI:7108521; E3, HECT-domain protein family;
            similar to GI:7108521, GB:AAF36454 from [Arabidopsis
            thaliana]
          Length = 3891

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +2

Query: 74   LKSLVTTSNSMRISRSSGLTRGCAGKRVLSLSTLMVPPV 190
            ++ L T S+  ++SRS+G   G +  RVL + + +  P+
Sbjct: 3298 VRELATLSSKQKMSRSTGSMAGASILRVLQVLSSLTSPI 3336


>At5g64360.3 68418.m08085 DNAJ heat shock N-terminal
           domain-containing protein low similarity to AHM1
           [Triticum aestivum] GI:6691467; contains Pfam profile
           PF00226 DnaJ domain
          Length = 464

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = -1

Query: 254 STEPRALSLWFSLPVMGTLTIAPEVPSELIVRAPACRRTLE 132
           S +P A S W + P    L   P+   E  ++   CRR  +
Sbjct: 187 SADPMATSFWTACPYCFVLFEYPKAYEECTLKCQECRRAFQ 227


>At5g64360.2 68418.m08084 DNAJ heat shock N-terminal
           domain-containing protein low similarity to AHM1
           [Triticum aestivum] GI:6691467; contains Pfam profile
           PF00226 DnaJ domain
          Length = 464

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = -1

Query: 254 STEPRALSLWFSLPVMGTLTIAPEVPSELIVRAPACRRTLE 132
           S +P A S W + P    L   P+   E  ++   CRR  +
Sbjct: 187 SADPMATSFWTACPYCFVLFEYPKAYEECTLKCQECRRAFQ 227


>At5g64360.1 68418.m08083 DNAJ heat shock N-terminal
           domain-containing protein low similarity to AHM1
           [Triticum aestivum] GI:6691467; contains Pfam profile
           PF00226 DnaJ domain
          Length = 422

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = -1

Query: 254 STEPRALSLWFSLPVMGTLTIAPEVPSELIVRAPACRRTLE 132
           S +P A S W + P    L   P+   E  ++   CRR  +
Sbjct: 187 SADPMATSFWTACPYCFVLFEYPKAYEECTLKCQECRRAFQ 227


>At3g57030.1 68416.m06348 strictosidine synthase family protein
           similar to strictosidine synthase [Rauvolfia
           serpentina][SP|P15324]
          Length = 374

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 275 NFIWLVRSTEPRALSLWFSLPVMGTLTIAPEVP 177
           +F+ +V +T  + L LW S P  GT  +  E+P
Sbjct: 231 SFVLVVETTTCKILRLWLSGPNAGTHQVFAELP 263


>At5g55530.3 68418.m06918 C2 domain-containing protein low
           similarity to cold-regulated gene SRC2 [Glycine max]
           GI:2055230; contains Pfam profile PF00168: C2 domain
          Length = 405

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 19/61 (31%), Positives = 32/61 (52%)
 Frame = +1

Query: 163 TINSDGTSGAMVKVPITGNENHKLSALGSVDLTNQMKLGAATAGLAYDNVNGHGATLTKT 342
           TI+S+ TS ++V    +  ENH  +++ S+   +  +   AT G A  + + H AT T  
Sbjct: 242 TIDSE-TSDSLVT---SDAENHVTNSVTSILKQDSPESSNATNGAASPHASAHSATETPN 297

Query: 343 H 345
           H
Sbjct: 298 H 298


>At5g55530.2 68418.m06917 C2 domain-containing protein low
           similarity to cold-regulated gene SRC2 [Glycine max]
           GI:2055230; contains Pfam profile PF00168: C2 domain
          Length = 405

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 19/61 (31%), Positives = 32/61 (52%)
 Frame = +1

Query: 163 TINSDGTSGAMVKVPITGNENHKLSALGSVDLTNQMKLGAATAGLAYDNVNGHGATLTKT 342
           TI+S+ TS ++V    +  ENH  +++ S+   +  +   AT G A  + + H AT T  
Sbjct: 242 TIDSE-TSDSLVT---SDAENHVTNSVTSILKQDSPESSNATNGAASPHASAHSATETPN 297

Query: 343 H 345
           H
Sbjct: 298 H 298


>At5g55530.1 68418.m06916 C2 domain-containing protein low
           similarity to cold-regulated gene SRC2 [Glycine max]
           GI:2055230; contains Pfam profile PF00168: C2 domain
          Length = 405

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 19/61 (31%), Positives = 32/61 (52%)
 Frame = +1

Query: 163 TINSDGTSGAMVKVPITGNENHKLSALGSVDLTNQMKLGAATAGLAYDNVNGHGATLTKT 342
           TI+S+ TS ++V    +  ENH  +++ S+   +  +   AT G A  + + H AT T  
Sbjct: 242 TIDSE-TSDSLVT---SDAENHVTNSVTSILKQDSPESSNATNGAASPHASAHSATETPN 297

Query: 343 H 345
           H
Sbjct: 298 H 298


>At5g65160.1 68418.m08195 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515 TPR Domain
          Length = 593

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 253 DLTNQMKLGAATAGLAYDNVNGHGATLT 336
           +L N  + G  TAG+ Y N NG+G   T
Sbjct: 180 NLGNLNQTGPVTAGVNYGNNNGYGVKRT 207


>At5g39910.1 68418.m04840 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein similar to
           polygalacturonase PG1 [Glycine max] GI:5669846; contains
           PF00295: Glycosyl hydrolases family 28
           (polygalacturonases)
          Length = 373

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -1

Query: 218 LPVMGTLTIAPEVPSELIVRAPACRRTLELAHCSG 114
           L + G L IAPE P E       C + +E AH +G
Sbjct: 98  LSISGNL-IAPESPYEWKCNKDDCHQWIEFAHING 131


>At1g56350.1 68414.m06479 peptide chain release factor, putative
           similar to SP|P28353 Peptide chain release factor 2
           (RF-2). {Salmonella typhi}; contains Pfam profiles
           PF00472: Peptidyl-tRNA hydrolase domain, PF03462: PCRF
           domain
          Length = 482

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +2

Query: 89  TTSNSMRISR-SSGLTRGCAGKRVLSLSTLMVPPVLWSRYP*LAMKTTSSVLLVQSISLT 265
           TT +++RI    +G+T  C  +R    +      VL SR   L M   +++    + SLT
Sbjct: 365 TTDSAVRIVHIPTGITATCQNERSQHSNKASAMAVLQSRLDQLEMARQTAMNAQHTQSLT 424

Query: 266 K*SW 277
           + SW
Sbjct: 425 EISW 428


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,391,212
Number of Sequences: 28952
Number of extensions: 157107
Number of successful extensions: 374
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 374
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 595686720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)