Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_E18
         (385 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces po...    24   7.1  
SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr 1|...    24   7.1  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    24   9.4  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    24   9.4  
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb...    24   9.4  

>SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +1

Query: 271 ISVAATCAKKIYKRHKFDAWYGWKNHCQHGLPDI 372
           + +  TC    +  +K +  +GW  + QHG PD+
Sbjct: 164 VLIGVTCILLSFLVYKMNKAFGWIMYQQHG-PDL 196


>SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 492

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 13/51 (25%), Positives = 21/51 (41%)
 Frame = +1

Query: 22  KRFTRCGLVQELRRQGFDESLMSNWVCLVENESGRFTDKIGKVNKNGSRDY 174
           + + +  ++ +  R GFD S   NW        GR T      N   ++DY
Sbjct: 427 REYLKKTILTDFMRFGFDGSGADNWFDAGSCIDGRLTSAWNWANNIHTKDY 477


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
           Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +1

Query: 322 DAWYGWKNHCQHGLPD 369
           D W  W+NH  H  PD
Sbjct: 44  DYWGKWENHQYHPSPD 59


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +1

Query: 301 IYKRHKFDAWYGWKNHCQHGL 363
           + K H ++   GW ++C H L
Sbjct: 178 LMKLHSYNVVNGWYSYCYHSL 198


>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 730

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +1

Query: 46  VQELRRQGF--DESLMSNWVCLVENESGRFTDKIGKVNKNG 162
           V + R++ +  DE+L    +  +  +SG F   + K+ +NG
Sbjct: 20  VSDTRKRQYQRDEALRKKIISELGKKSGNFESPVRKIRRNG 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,566,521
Number of Sequences: 5004
Number of extensions: 29924
Number of successful extensions: 69
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)