Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_E18
         (385 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g05470.1 68414.m00556 endonuclease/exonuclease/phosphatase fa...    29   1.4  
At2g32010.1 68415.m03911 endonuclease/exonuclease/phosphatase fa...    28   1.9  
At5g13580.1 68418.m01570 ABC transporter family protein                27   5.7  
At5g47050.1 68418.m05798 expressed protein                             26   7.5  
At4g11980.1 68417.m01907 MutT/nudix family protein low similarit...    26   7.5  
At2g47940.1 68415.m05995 DegP2 protease (DEGP2) identical to Deg...    26   7.5  
At2g39350.1 68415.m04830 ABC transporter family protein                26   7.5  
At2g44090.1 68415.m05483 expressed protein                             26   9.9  

>At1g05470.1 68414.m00556 endonuclease/exonuclease/phosphatase
           family protein simlar to inositol polyphosphate
           5-phosphatase I (GI:10444261) and II (GI:10444263)
           [Arabidopsis thaliana]; contains Pfam profile PF03372:
           Endonuclease/Exonuclease/phosphatase family
          Length = 585

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 17/52 (32%), Positives = 22/52 (42%)
 Frame = +1

Query: 85  MSNWVCLVENESGRFTDKIGKVNKNGSRDYGLFQINDKYWCSTGSTPGKDCH 240
           M NW  L+EN+  R   K G V K  +     F    KY  ++    G D H
Sbjct: 451 MQNWRALLENDQLRIEQKRGHVFKGWNEGKIYFPPTYKYSRNSDRYSGDDLH 502


>At2g32010.1 68415.m03911 endonuclease/exonuclease/phosphatase
           family protein similar to inositol polyphosphate
           5-phosphatase I (GI:10444261) and II (GI:10444263)
           [Arabidopsis thaliana]; contains Pfam profile PF03372:
           Endonuclease/Exonuclease/phosphatase family
          Length = 594

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 17/52 (32%), Positives = 22/52 (42%)
 Frame = +1

Query: 85  MSNWVCLVENESGRFTDKIGKVNKNGSRDYGLFQINDKYWCSTGSTPGKDCH 240
           M NW  L+EN+  R   K G V K  +     F    KY  ++    G D H
Sbjct: 460 MQNWRALLENDQLRIEQKRGHVFKGWNEGKIYFPPTYKYSNNSDRYAGGDLH 511


>At5g13580.1 68418.m01570 ABC transporter family protein
          Length = 727

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 179 SSRSMTNTGAAPGPLLERIAT*LVISY*LTTLAWQL 286
           + RSMTN+   P     R+   LV  + L T+ WQL
Sbjct: 427 AKRSMTNSRRQPELFGIRLGAVLVTGFILATMFWQL 462


>At5g47050.1 68418.m05798 expressed protein
          Length = 300

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +2

Query: 275 AWQLRAQRRFTNATSLTLGTDGKITVNMDCQILATVE 385
           AWQ+RA  R   ATSL       + V     ++ TVE
Sbjct: 185 AWQMRAAAREAEATSLQAQLHQAVVVAHGGGVITTVE 221


>At4g11980.1 68417.m01907 MutT/nudix family protein low similarity
           to SP|P54570 ADP-ribose pyrophosphatase (EC 3.6.1.13)
           {Bacillus subtilis}; contains Pfam profile PF00293:
           NUDIX domain
          Length = 309

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 61  RQGFDESLMSNWVCLVENESGRFTD 135
           R   D SL  NW+  +E+ESG   D
Sbjct: 71  RDAIDSSLFRNWLRNLESESGILAD 95


>At2g47940.1 68415.m05995 DegP2 protease (DEGP2) identical to DegP2
           protease GI:13172275 from [Arabidopsis thaliana];
           identical to cDNA  DegP2 protease (DEGP2) nuclear gene
           for chloroplast product GI:13172274
          Length = 607

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 269 TLAWQLRAQRRFTNATSLTLGTDGKITVNMDC 364
           +L WQ   QR+FT+  S  +  DGK+  N  C
Sbjct: 131 SLPWQ--KQRQFTSTGSAFMIGDGKLLTNAHC 160


>At2g39350.1 68415.m04830 ABC transporter family protein 
          Length = 740

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 173 TASSRSMTNTGAAPGPLLERIAT*LVISY*LTTLAWQL 286
           T S RSM N+   P     RIA+ ++  + L T+ W+L
Sbjct: 438 TLSKRSMLNSRRQPELFGIRIASVVITGFILATVFWRL 475


>At2g44090.1 68415.m05483 expressed protein
          Length = 582

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 20/69 (28%), Positives = 32/69 (46%)
 Frame = +1

Query: 79  SLMSNWVCLVENESGRFTDKIGKVNKNGSRDYGLFQINDKYWCSTGSTPGKDCHVTCNQL 258
           SL S W    E+E    T+ I K+  +G++DY    +   +  S  S+    CH +    
Sbjct: 103 SLDSIWFLSTEHELRGITELIAKIICHGAQDYTRATLRTSFLASCVSS----CH-SRTVS 157

Query: 259 LTDDISVAA 285
           L D ++V A
Sbjct: 158 LADTVTVMA 166


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,285,432
Number of Sequences: 28952
Number of extensions: 159543
Number of successful extensions: 414
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 537681456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)