Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_E17
(545 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 1.4
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 1.8
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 27 2.4
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 3.2
SPAC5H10.09c |||3-methyl-2-oxobutanoatehydroxymethyltransferase|... 26 3.2
SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce... 25 7.3
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c... 25 7.3
SPMIT.03 |||mitochondrial DNA binding endonuclease|Schizosacchar... 25 9.6
SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate reductase/... 25 9.6
>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 452
Score = 27.5 bits (58), Expect = 1.4
Identities = 34/129 (26%), Positives = 55/129 (42%), Gaps = 12/129 (9%)
Frame = -3
Query: 534 YSLCNATFSS-------SFPAYFSL-ANTSEPVGL*SISTSPRWQLTSLKKSA---VNCE 388
++LCNAT SS S+ Y S ++SE ++ + + +T +K S+ V E
Sbjct: 278 FALCNATTSSSLFRQIASYGVYGSFHFSSSESGSFANLIGTNNYFMTDVKSSSVVIVQSE 337
Query: 387 RSIFSGSAKCCVSATFFKF-SCDALYEKSFSKITTERPSPVRFFNQ*AS*SXPXKTTAYN 211
S SA + T+F + S +L F+ T+ S N + P +T Y
Sbjct: 338 TSCSINSASMSSNTTYFYWNSTSSLSSSVFTNTTSSSNST----NSSIPTTYPSNSTTYQ 393
Query: 210 NNIGVFWWS 184
N + WS
Sbjct: 394 NITTSYPWS 402
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.1 bits (57), Expect = 1.8
Identities = 20/82 (24%), Positives = 37/82 (45%)
Frame = -3
Query: 510 SSSFPAYFSLANTSEPVGL*SISTSPRWQLTSLKKSAVNCERSIFSGSAKCCVSATFFKF 331
SSS ++ S ++S S S+SP +++ S+ + S FS + S++ F
Sbjct: 311 SSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPSSSSFSSTTSSSKSSSSFSS 370
Query: 330 SCDALYEKSFSKITTERPSPVR 265
+ + S S +T+ S R
Sbjct: 371 TVSSSSSTSSSTLTSSSSSSSR 392
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 26.6 bits (56), Expect = 2.4
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -3
Query: 390 ERSIFSGSAKCCVSATFFKFSCDALYEKSFSK 295
+RS+ +G A CC+ ++ KF LY KS K
Sbjct: 592 KRSVETGRAICCICSSLHKF----LYSKSIRK 619
>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 230
Score = 26.2 bits (55), Expect = 3.2
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = -3
Query: 531 SLCNATFSSSFPAYFSLANTSEPVGL*SISTSPRWQLTSLKKSAVNCERSIFSGSA 364
S+ T S+ FP+ + A+TS SISTS Q ++ S + S SG++
Sbjct: 35 SINYGTLSTVFPSLYRRASTSSSSSSSSISTSHDSQPSTSSSSPSSTSTSSSSGTS 90
>SPAC5H10.09c
|||3-methyl-2-
oxobutanoatehydroxymethyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 267
Score = 26.2 bits (55), Expect = 3.2
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3
Query: 336 KFSCDALYEKSFSKITTERPSPV 268
KF+C Y+ SFS++ E+ PV
Sbjct: 20 KFACITAYDASFSRLFAEQGMPV 42
>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 242
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 192 WWSNSCFLSLNNTGISFEITFQVFINGLR 106
W S+ LS+N T I F + F+NG++
Sbjct: 108 WASHVLDLSVNMTPIFFRYIVRQFVNGIK 136
>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1315
Score = 25.0 bits (52), Expect = 7.3
Identities = 14/72 (19%), Positives = 31/72 (43%)
Frame = -3
Query: 543 CNPYSLCNATFSSSFPAYFSLANTSEPVGL*SISTSPRWQLTSLKKSAVNCERSIFSGSA 364
C+ ++ + F + P++FS + + ++ S + S+V+C +G
Sbjct: 221 CSKINITGSVFDNFIPSFFSFGTHGDGIKQIAVDDSRSLLYVLRETSSVSCYELTKNGVN 280
Query: 363 KCCVSATFFKFS 328
+C F+ FS
Sbjct: 281 RC----VFYSFS 288
>SPMIT.03 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial||Partial|Manual
Length = 323
Score = 24.6 bits (51), Expect = 9.6
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 239 LQLAYWLKKRTGEGLSVVILEKD 307
+QLAY++KK+ G G+ I +K+
Sbjct: 115 IQLAYYIKKQIGYGIVRKIKDKN 137
>SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate
reductase/acetylglutamate kinase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 885
Score = 24.6 bits (51), Expect = 9.6
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -1
Query: 311 RNLFLR*PQKDLRQYAFLTNKPVEAXRIKPPPIITISA 198
R+LFL+ ++ A T KP++A KP ++ + A
Sbjct: 541 RSLFLKGGKRFFSAEAQKTQKPLKAVSSKPAKVVLLGA 578
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,192,889
Number of Sequences: 5004
Number of extensions: 42413
Number of successful extensions: 126
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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