Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_E17
         (545 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0658 - 30942890-30943054,30943159-30943266,30943448-309435...    29   3.2  
12_02_1142 + 26432634-26432786,26433222-26433314,26433465-264338...    28   4.2  
02_04_0329 + 22081052-22082434                                         27   7.4  
11_06_0211 + 21305535-21305895,21306512-21306761,21307543-213076...    27   9.8  

>01_06_0658 -
           30942890-30943054,30943159-30943266,30943448-30943598,
           30943683-30943780,30943869-30944020,30944298-30944403,
           30944499-30944588,30944668-30944813,30945396-30945695,
           30945953-30946038,30947260-30947996
          Length = 712

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = -3

Query: 459 GL*SISTSPRWQLTSLKKSAV-NCERSIFSGSAKCCVSATFFK-FSCDALYE 310
           GL   S S R  L S+  SA+ NC  S++ GS K C+       +  D +Y+
Sbjct: 607 GLNEGSNSERRSLASVMLSALKNCRNSMYMGSLKDCIDPNLMDLYPHDCVYK 658


>12_02_1142 +
           26432634-26432786,26433222-26433314,26433465-26433821,
           26433883-26434188,26434251-26434259
          Length = 305

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -1

Query: 152 EFLLKLRSKFLLMGFVLNRTNQPRRIPAARGHYLDAATRCSSL 24
           E  LKL+   L+  FV N       +   +GH+    T C+S+
Sbjct: 73  EINLKLKGDQLMYAFVSNAVEATVSVKVLQGHFYGKITACTSM 115


>02_04_0329 + 22081052-22082434
          Length = 460

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 41  WRRLNSVPGLQEFGEADSFYSTRSPLIKTWNVISKEIPV 157
           W+RL  +P      E +S   T+S   +TWNV+   I +
Sbjct: 119 WQRLPPMPSF--VSEEESTGRTQSSWFQTWNVVGSSIRI 155


>11_06_0211 + 21305535-21305895,21306512-21306761,21307543-21307652,
            21308836-21309067,21310233-21310603,21311434-21311507,
            21311727-21311880,21312251-21312434,21313066-21313291,
            21313704-21314135,21314399-21314456,21314748-21314829,
            21315350-21315421,21316594-21316737,21317379-21317457,
            21318023-21318105,21318198-21318252,21318488-21318778
          Length = 1085

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 346  STHTTFCTPRKYTSLTVHC 402
            STH T CT   YT  T +C
Sbjct: 1015 STHFTECTDENYTQATAYC 1033


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,110,259
Number of Sequences: 37544
Number of extensions: 258394
Number of successful extensions: 675
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)