Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_E17
         (545 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58214| Best HMM Match : DAO (HMM E-Value=0.00017)                   47   9e-06
SB_49613| Best HMM Match : Transposase_5 (HMM E-Value=0.033)           29   2.5  
SB_22113| Best HMM Match : WD40 (HMM E-Value=1.4)                      28   5.7  
SB_41939| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_31791| Best HMM Match : PIG-U (HMM E-Value=0.15)                    27   7.6  

>SB_58214| Best HMM Match : DAO (HMM E-Value=0.00017)
          Length = 280

 Score = 47.2 bits (107), Expect = 9e-06
 Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
 Frame = +2

Query: 287 VVILEKDFSYKASQENLKNVALTQHFALPENILLSQFTADFLRDVNCHL-----GDVDID 451
           V ++E+D  Y      L    + Q F++ ENI LSQ++  F  +V+ HL        DI 
Sbjct: 130 VCVIERDPGYSKCSSTLSVGGIRQQFSMAENIQLSQYSYKFFTEVSKHLTVDPADPADIH 189

Query: 452 YNPTGSLVLASEKYAGKLEENVALQREYG 538
                 ++LAS++    L EN  LQR+ G
Sbjct: 190 LRRGAYVMLASKEGVSTLMENYKLQRDLG 218


>SB_49613| Best HMM Match : Transposase_5 (HMM E-Value=0.033)
          Length = 999

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
 Frame = +2

Query: 167  LKKQELLHQNTPILLL*AVVLXGXLQLAYWLKKRTGEGLSVVILEKDFSYKASQENLKNV 346
            L  Q+L+ +  P +   A  L   L   ++    TG  ++V+   +D  Y+AS ++    
Sbjct: 775  LMLQQLVAEKDPEIYKRAQFLILTLHAHHFC--HTGHDMAVMPTVRDLDYQASSKSFLFT 832

Query: 347  ALTQHFALPENILL-SQFTADFL 412
               +H  LPE +L  + +  DFL
Sbjct: 833  LYNKHGYLPEKLLTRTPYKHDFL 855


>SB_22113| Best HMM Match : WD40 (HMM E-Value=1.4)
          Length = 509

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 19/64 (29%), Positives = 26/64 (40%)
 Frame = -3

Query: 504 SFPAYFSLANTSEPVGL*SISTSPRWQLTSLKKSAVNCERSIFSGSAKCCVSATFFKFSC 325
           S  A   LA TS P G    S   RW +   KK  +   +   +   + C     F++SC
Sbjct: 119 SHVAVSDLAYTSRPFG----SCIKRWDM---KKEGIQLHQKFQNFQCRACTQPQTFRWSC 171

Query: 324 DALY 313
            A Y
Sbjct: 172 VATY 175


>SB_41939| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 819

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +1

Query: 238 ASTGLLVKKAYWRRSFCGYLRKRFLIQSITREFKKCST 351
           +ST LL  K  W  +FC +LRK  +   +    +KCST
Sbjct: 86  SSTQLLASKRKW--NFCAWLRKMEVNVLLEGYLEKCST 121


>SB_31791| Best HMM Match : PIG-U (HMM E-Value=0.15)
          Length = 1366

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 1/81 (1%)
 Frame = -3

Query: 537 PYSLCNATFSSSFPAYFSLANTSEPVGL*SISTSPRWQL-TSLKKSAVNCERSIFSGSAK 361
           P+ + N++F S+F    S        G   I     +           +   +IFS S K
Sbjct: 714 PFEVFNSSFRSTFLETLSTGTFISKTGFVHIDNDTMFSCPVGSYAKLTDTSHTIFSDSGK 773

Query: 360 CCVSATFFKFSCDALYEKSFS 298
           C ++ T   + C +  +  +S
Sbjct: 774 CSINITKLIYECKSCPKAHYS 794


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,178,606
Number of Sequences: 59808
Number of extensions: 299085
Number of successful extensions: 785
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)