Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_E17
         (545 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77667-3|CAB01237.1|  527|Caenorhabditis elegans Hypothetical pr...    53   1e-07
Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical pr...    29   1.7  
Z81461-1|CAB03833.1|  944|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AL117203-10|CAB60424.2|  855|Caenorhabditis elegans Hypothetical...    28   5.0  
AF067949-1|AAC19236.2| 1446|Caenorhabditis elegans Suppressor of...    27   6.7  

>Z77667-3|CAB01237.1|  527|Caenorhabditis elegans Hypothetical
           protein M04B2.4 protein.
          Length = 527

 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 35/96 (36%), Positives = 51/96 (53%), Gaps = 9/96 (9%)
 Frame = +2

Query: 221 VVLXGXLQ---LAYWLKKR-TGEGLSVVILEKDFSYKASQENLKNVALTQHFALPENILL 388
           V++ G L     A+WLK+R   E   VV++E +  +  S   L    +TQ F++PE + +
Sbjct: 97  VIIGGGLSGSSTAFWLKERFRDEDFKVVVVENNDVFTKSSTMLSTGGITQQFSIPEFVDM 156

Query: 389 SQFTADFLRDVNCHL-----GDVDIDYNPTGSLVLA 481
           S FT +FLR    HL        DI++ PTG L LA
Sbjct: 157 SLFTTEFLRHAGEHLRILDSEQPDINFFPTGYLRLA 192


>Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical protein
            C06B8.7 protein.
          Length = 3118

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 497  QHIFHWLTPVNPWDYNQY 444
            Q+++HWLTP   WDYN +
Sbjct: 2040 QNVYHWLTP--RWDYNPH 2055


>Z81461-1|CAB03833.1|  944|Caenorhabditis elegans Hypothetical
           protein C04F12.1 protein.
          Length = 944

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -1

Query: 152 EFLLKLRSKFLLMGFVLNRTNQPRRIPAAR 63
           E LLKLR++F+L  ++ +R   P+++   R
Sbjct: 723 EHLLKLRARFMLNHYITSRKKYPQQVVILR 752


>AL117203-10|CAB60424.2|  855|Caenorhabditis elegans Hypothetical
           protein Y48C3A.14 protein.
          Length = 855

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = -3

Query: 435 PRWQLTSLKKSAVNCERSIFSGSAKCCVSATFFKFSCDALYEKSFSKITTERPSPVRF 262
           P+W++T  K  +V     +F G+ K  V +T     CDA + K+  K  + +P  + +
Sbjct: 735 PKWRMTCNKCPSVV---GLFEGAIKVKVDSTRSCEQCDAQFIKAEFKPNSGKPGAIEY 789


>AF067949-1|AAC19236.2| 1446|Caenorhabditis elegans Suppressor of
           constitutive dauerformation protein 2 protein.
          Length = 1446

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 422 NCHLGDVDIDYNPTGSLVLASEKYAGKLEENVALQRE 532
           NC +   D + N T  +VL  + Y GK E++  L +E
Sbjct: 133 NCFIETCDEETNSTELMVLYPDCYCGKREKHCDLSKE 169


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,214,874
Number of Sequences: 27780
Number of extensions: 241263
Number of successful extensions: 678
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)