Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_E17
         (545 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g09270.1 68416.m01101 glutathione S-transferase, putative sim...    29   2.7  
At3g25140.1 68416.m03139 glycosyl transferase family 8 protein c...    28   3.5  
At3g22104.1 68416.m02789 phototropic-responsive NPH3 protein-rel...    28   3.5  
At1g07150.1 68414.m00761 protein kinase family protein contains ...    28   3.5  
At1g74830.1 68414.m08670 expressed protein contains Pfam profile...    28   4.7  
At1g42470.1 68414.m04897 patched family protein similar to SP|O1...    27   6.2  
At1g78370.1 68414.m09133 glutathione S-transferase, putative sim...    27   8.2  
At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pf...    27   8.2  

>At3g09270.1 68416.m01101 glutathione S-transferase, putative
           similar to glutathione transferase GB:CAA71784 [Glycine
           max]
          Length = 224

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +2

Query: 47  RLNSVPGLQEFGEADSFYSTRSPLIKTWNVISKEIPVL 160
           +L  +P   E+ E D  Y  RSP++  +N I K++PVL
Sbjct: 26  KLKGIP--YEYIEED-VYGNRSPMLLKYNPIHKKVPVL 60


>At3g25140.1 68416.m03139 glycosyl transferase family 8 protein
           contains Pfam profile: PF01501 glycosyl transferase
           family 8
          Length = 559

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
 Frame = +2

Query: 41  WRRLNSVPGLQEFGEAD----SFYSTRSPLIKTWNVI 139
           W+ LN    L + G       +FYST  PL K+W+V+
Sbjct: 465 WQNLNENRALWKLGTLPPGLITFYSTTKPLDKSWHVL 501


>At3g22104.1 68416.m02789 phototropic-responsive NPH3
           protein-related contains BTB/POZ domain,
           INTERPRO:IPR000210
          Length = 506

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -3

Query: 414 LKKSAVNCERSIFSGSAKCCVSATFFKFSCDALYEKSF 301
           ++K  +  E S  S  + C   ++ F+FSCD+   +SF
Sbjct: 142 VEKLCLTIEMSPSSAGSACSPDSSLFRFSCDSKSTESF 179


>At1g07150.1 68414.m00761 protein kinase family protein contains
           eukaryotic protein kinase domain, INTERPRO:IPR000719
          Length = 499

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 22/92 (23%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
 Frame = +2

Query: 257 LKKRTGEGLSVVILEKDFSYKASQENLKNVALTQHFALPENILLSQFTADFL-RDVNCHL 433
           + K  GE  +V  ++   S     E+L+N  ++   +L  +  + +F  D + ++     
Sbjct: 41  ISKTNGEVFAVKSVDLATSLPTQSESLEN-EISVFRSLKPHPYIVKFLGDGVSKEGTTTF 99

Query: 434 GDVDIDYNPTGSLVLASEKYAGKLEENVALQR 529
            ++ ++Y P G +  AS +  GK+E+   LQR
Sbjct: 100 RNLYLEYLPNGDV--ASHRAGGKIEDETLLQR 129


>At1g74830.1 68414.m08670 expressed protein contains Pfam profile
           PF04576: Protein of unknown function, DUF593
          Length = 542

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 450 SISTSPRWQLTSLKKSAVN 394
           S   SPRW + SLKKS +N
Sbjct: 267 SAQNSPRWSVRSLKKSVLN 285


>At1g42470.1 68414.m04897 patched family protein similar to SP|O15118
            Niemann-Pick C1 protein precursor from Homo sapiens
            (GB:AAB63982) (GI:2276463); contains Pfam profile PF02460
            Patched family
          Length = 1272

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -2

Query: 76   FLQPGDTI*TPPPGAPACSLSEVC 5
            F  P D     PPG  +C LSEVC
Sbjct: 945  FCPPDDQPPCCPPGQTSCGLSEVC 968


>At1g78370.1 68414.m09133 glutathione S-transferase, putative
           similar to 2,4-D inducible glutathione S-transferase
           GI:2920666 from [Glycine max]
          Length = 217

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 74  EFGEADSFYSTRSPLIKTWNVISKEIPVL 160
           EF   +  +S +SPL+   N I K+IPVL
Sbjct: 29  EFEYREEDFSNKSPLLLQSNPIHKKIPVL 57


>At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pfam
           PF00400: WD domain, G-beta repeat; similar to WD-repeat
           protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
           sapiens]; similar to rab11 binding protein GI:4512103
           from [Bos taurus]
          Length = 593

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = +2

Query: 284 SVVILEKDFSYKASQENLKNVALTQHFALPENILLSQFTADFLRDVNCHLGDV-DIDYNP 460
           S  + +KDF YK+S+E +  V +  +     ++ LS   A  ++ +N H G +  + ++P
Sbjct: 153 SAGVKDKDFKYKSSEETMSKVKVKTN--KKSHVELS--AAYMVQKINGHKGKIWTLKFSP 208

Query: 461 TG 466
            G
Sbjct: 209 DG 210


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,393,560
Number of Sequences: 28952
Number of extensions: 214689
Number of successful extensions: 564
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)