Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_E15
         (572 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44479| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.51 
SB_44146| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_17501| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_53740| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             29   2.7  
SB_6887| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.7  
SB_29132| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_54844| Best HMM Match : Microvir_J (HMM E-Value=1.7)                27   8.2  
SB_20301| Best HMM Match : Drf_FH1 (HMM E-Value=0.43)                  27   8.2  
SB_5699| Best HMM Match : DUF689 (HMM E-Value=3.8e-10)                 27   8.2  
SB_1018| Best HMM Match : adh_short (HMM E-Value=2.1e-33)              27   8.2  
SB_56913| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  

>SB_44479| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 197

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +1

Query: 364 NNAVTHKMHAKELDRQTVSYPWT-APKDLEGDVVFKVTIVTS 486
           ++AVT K+  K  DR+ +S PW   P D+   V      VTS
Sbjct: 100 DSAVTVKVRVKVRDREIISIPWVPEPPDISRPVTLSQNAVTS 141


>SB_44146| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 310

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -2

Query: 418 KQSVCLILWHASCGS--RRYLVHHS*GVARRYHRGLRSK 308
           +  + L+LW  + GS  RR+++HH  G  +  H+ L  K
Sbjct: 37  RPKIALLLWVLNRGSKDRRFVIHHGQGNHKSNHKNLHKK 75


>SB_17501| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 819

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +1

Query: 187 TAVSSVKAGHSIDVVISGKTPEDK 258
           T+V  +K G  I+VVIS K PED+
Sbjct: 72  TSVEQMKEGTVIEVVISAKVPEDE 95


>SB_53740| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 1980

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = +3

Query: 126  RHDPRARC*CSDSTSALHHHYSCQLGKSWSFH*RGYQRQNTRRQNGRH 269
            RHD    C  S ++   +    C   + W     GY+RQ TR    +H
Sbjct: 1789 RHDKGVECLPSCTSDGSYEELQCIRDECWCVDKYGYERQATRMIGRKH 1836


>SB_6887| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 875

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -2

Query: 316 RSKCRRSC-HPDELPGGCRPFC 254
           R++C R C +P+ +PG C P C
Sbjct: 250 RTECSRDCPNPEPIPGQCCPIC 271


>SB_29132| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 450

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -3

Query: 372 GVIWFTTVE-GLREGIIGAYGPSADDLVTLTSFQEDA 265
           GV WF  ++  +R  I GA GP+ +     T   EDA
Sbjct: 285 GVSWFALLKVNIRSSIAGAGGPAMEAQTEFTKLLEDA 321


>SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3051

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +2

Query: 143  TLLMFRQYQRLTPSLQLSAR*KLVIPLTWLSAAKHPKTKWPASSW 277
            +LL  R  Q   P    S     V  + WL+ +  P++ WP S W
Sbjct: 1582 SLLEVRNSQNCDPIFVASVFVATVARVAWLTLSLWPRSLWPWSFW 1626


>SB_54844| Best HMM Match : Microvir_J (HMM E-Value=1.7)
          Length = 189

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/60 (23%), Positives = 33/60 (55%)
 Frame = +3

Query: 369 RRDPQDACQRIRQTDCFLPLDSS*GLRRRRCVQGHHCHELRRLLGRNRISPRKGSKSLNH 548
           R++ ++  QR+++T   +   +  GL RR+C+Q     E+R    +   S +  +++++H
Sbjct: 31  RKEAENELQRLKKT---VNNTTHLGLERRKCLQSFKSQEIRVFGSKGANSSKDETENIDH 87


>SB_20301| Best HMM Match : Drf_FH1 (HMM E-Value=0.43)
          Length = 346

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/52 (26%), Positives = 22/52 (42%)
 Frame = +1

Query: 97  PTGAPPSACFDMIPGHAADVQTVPAPYTITTAVSSVKAGHSIDVVISGKTPE 252
           P G  P  C  + PG+  DV  +PA Y     +     G  + ++  G  P+
Sbjct: 274 PPGYGPDVCI-IPPGYGPDVYIIPADYGPDVCIIPPGYGPDVCIIPPGYGPD 324


>SB_5699| Best HMM Match : DUF689 (HMM E-Value=3.8e-10)
          Length = 333

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 21/60 (35%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
 Frame = +3

Query: 378 PQDA-CQRIRQTDCFLPLDSS*GLRRRRCVQGHHCHELRRLLGRNRISPRKGSKSLNHVS 554
           P D  C R+R     +P  S    R       HH   LR    R R  P K  K LN VS
Sbjct: 257 PTDVDCGRVRGLAAVIPSLSIGNFRISILGIEHHKRRLRPCDKRKRAGPNKNVKQLNGVS 316


>SB_1018| Best HMM Match : adh_short (HMM E-Value=2.1e-33)
          Length = 717

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
 Frame = +1

Query: 256 KMAGILL-EARQGDKIVGTWTV---SPDD-TFSQPLNCGEPNNAVT 378
           K+ GI L   ++G K+V +WTV   +P    F+ P   G+P+  +T
Sbjct: 625 KVKGIFLWHVKKGGKVVSSWTVDLKTPGGAVFTGPPKGGKPDTTIT 670


>SB_56913| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1603

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
 Frame = +1

Query: 205  KAGHSIDVVISGKTPE---DKMAGILLEARQGDKIVGTWTVSPDDTFSQPLNCGEPNNAV 375
            ++G      +SG  P+       G L  AR  ++  G  T +P  +  +P     P   V
Sbjct: 1281 RSGEVTSTSVSGNPPKLSPVSEVGTLDFARMMEEFQGFGTSAPVPSLPEPPEI--PALLV 1338

Query: 376  THKMHAKELDRQTVSYPWTAPKDLEGDVV 462
            T  + +K+LDR+T   P T P + E + V
Sbjct: 1339 TGSI-SKDLDRKTSGLPNTTPDNAERENV 1366


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,876,770
Number of Sequences: 59808
Number of extensions: 478695
Number of successful extensions: 1515
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1513
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)