Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_E15
         (572 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g52550.1 68418.m06525 expressed protein                             30   0.95 
At2g02120.1 68415.m00148 plant defensin-fusion protein, putative...    29   1.7  
At5g10080.1 68418.m01168 aspartyl protease family protein contai...    29   2.9  
At5g06580.1 68418.m00743 FAD linked oxidase family protein simil...    27   6.7  
At5g50200.3 68418.m06216 expressed protein similar to unknown pr...    27   8.9  
At5g50200.2 68418.m06218 expressed protein similar to unknown pr...    27   8.9  
At5g50200.1 68418.m06217 expressed protein similar to unknown pr...    27   8.9  

>At5g52550.1 68418.m06525 expressed protein
          Length = 360

 Score = 30.3 bits (65), Expect = 0.95
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = -3

Query: 195 DSCSDGVRRWYCLNISSVPWDHVEARARRCSGGVSAGKRHHRCNCYYVSEHH 40
           + C D  R          PWD+   +    SGG++    H RC+ Y V +++
Sbjct: 250 EDCDDSYRNTLNQETGFKPWDYT-TKINLFSGGINRFFPHQRCSSYAVHDNN 300


>At2g02120.1 68415.m00148 plant defensin-fusion protein, putative
           (PDF2.1) plant defensin protein family member, personal
           communication, Bart Thomma
           (Bart.Thomma@agr.kuleuven.ac.be); contains a
           gamma-thionin family signature (PDOC00725)
          Length = 77

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = -2

Query: 313 SKCRRSCHPDELPGG-CRPFCLRVFC 239
           + C   CH +  PGG CR F  R FC
Sbjct: 48  TNCENVCHNEGFPGGDCRGFRRRCFC 73


>At5g10080.1 68418.m01168 aspartyl protease family protein contains
           Eukaryotic and viral aspartyl proteases active site,
           PROSITE:PS00141
          Length = 528

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +1

Query: 103 GAPPSACF-DMIPGHAADVQTVPAPYTITTAVSSVKAGHSIDVVISGKTP 249
           G  PS C  D I    A   +  +P  + T     + GH++   I+GKTP
Sbjct: 447 GWSPSKCQEDKIEPPQASPGSTSSPNPLPTDEQQSRGGHAVSPAIAGKTP 496


>At5g06580.1 68418.m00743 FAD linked oxidase family protein similar
           to SP|Q12627 from Kluyveromyces lactis and SP|P32891
           from Saccharomyces cerevisiae; contains Pfam FAD linked
           oxidases, C-terminal domain PF02913, Pfam FAD binding
           domain PF01565
          Length = 567

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -1

Query: 350 LRGCEKV-SSGLTVQVPTILSP*RASRRMPAILSSGVLPL 234
           LR C ++ S+  +    T+LSP +  RR+P   SS + PL
Sbjct: 17  LRPCRQLHSTPKSTGDVTVLSPVKGRRRLPTCWSSSLFPL 56


>At5g50200.3 68418.m06216 expressed protein similar to unknown
           protein (pir||T05562) isoform contains a non-consensus
           AT acceptor splice site at intron 1
          Length = 210

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +1

Query: 379 HKMHAKELDRQTVSYPWTAPKDLEGDVVFKVTIVTSYAVFWVGIESA 519
           HK+ AK  D+   S  WT  +D+     F    V +YAV  +G E A
Sbjct: 110 HKIIAKPYDKTLQSTTWTLERDIPTGTYF----VRAYAVDAIGHEVA 152


>At5g50200.2 68418.m06218 expressed protein similar to unknown
           protein (pir||T05562) isoform contains a non-consensus
           AT acceptor splice site at intron 1
          Length = 210

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +1

Query: 379 HKMHAKELDRQTVSYPWTAPKDLEGDVVFKVTIVTSYAVFWVGIESA 519
           HK+ AK  D+   S  WT  +D+     F    V +YAV  +G E A
Sbjct: 110 HKIIAKPYDKTLQSTTWTLERDIPTGTYF----VRAYAVDAIGHEVA 152


>At5g50200.1 68418.m06217 expressed protein similar to unknown
           protein (pir||T05562) isoform contains a non-consensus
           AT acceptor splice site at intron 1
          Length = 210

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +1

Query: 379 HKMHAKELDRQTVSYPWTAPKDLEGDVVFKVTIVTSYAVFWVGIESA 519
           HK+ AK  D+   S  WT  +D+     F    V +YAV  +G E A
Sbjct: 110 HKIIAKPYDKTLQSTTWTLERDIPTGTYF----VRAYAVDAIGHEVA 152


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,670,183
Number of Sequences: 28952
Number of extensions: 312275
Number of successful extensions: 775
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1112061928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)