Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_E14
(618 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc... 29 0.41
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 29 0.71
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M... 27 1.6
SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces po... 27 2.2
SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr ... 26 5.0
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 26 5.0
SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces po... 26 5.0
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 25 6.6
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |... 25 6.6
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||... 25 8.8
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce... 25 8.8
SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 25 8.8
SPAC12B10.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 8.8
>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 29.5 bits (63), Expect = 0.41
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Frame = +2
Query: 53 FVLPAPYEVYPQFFVNMDTLLKIYRTKMQDGILHDAKAINYGIVKEEEQYVYYANYSNTF 232
FV+ + +P F NMD L K+ + GI DAK I +++ +Y+++A F
Sbjct: 689 FVVSSHIRSHPAFDPNMDVLKKV---PTETGI--DAKPIPQDLLR---KYIHFAR-EKVF 739
Query: 233 --LYHNEEQRLN*LYGDIR 283
L +E++++ LY D+R
Sbjct: 740 PRLQQMDEEKISRLYSDMR 758
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 28.7 bits (61), Expect = 0.71
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 18 ILQLSSAMILMDSFYQLLMKFIHNSSLIWTLYLRFI 125
++ L+ A L + YQ S +WTLYL F+
Sbjct: 143 VITLTDAHSLFERAYQTCKFHFSKSQCVWTLYLEFL 178
>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 629
Score = 27.5 bits (58), Expect = 1.6
Identities = 15/50 (30%), Positives = 29/50 (58%)
Frame = +2
Query: 83 PQFFVNMDTLLKIYRTKMQDGILHDAKAINYGIVKEEEQYVYYANYSNTF 232
P F ++D L +YR+K +D HD K+ ++ EE+ Y+ ++ + + F
Sbjct: 116 PSQFSSID-LSWVYRSKEEDDDFHDPKSSVVSLMGEED-YLGWSRFCDLF 163
>SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 396
Score = 27.1 bits (57), Expect = 2.2
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -3
Query: 295 KEWNPNISIKLVQPLFFIM 239
K W P ++ K+V PLFF++
Sbjct: 35 KSWQPLLTPKIVLPLFFVL 53
>SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 251
Score = 25.8 bits (54), Expect = 5.0
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 499 LMTSYYFPFAQRPDNYNLHSVXNYEA 576
L+ SYY PF DN ++ V YEA
Sbjct: 20 LLNSYYGPFYDDGDNTGVNVVDLYEA 45
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 25.8 bits (54), Expect = 5.0
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +1
Query: 445 GSIPEFSWYSPIKTGYYPLMTSYYFPFAQRP 537
G P+ +Y P + YYP +Y P +P
Sbjct: 107 GGYPQQPYYYPNQPNYYPAQPAYAQPVYAQP 137
>SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 25.8 bits (54), Expect = 5.0
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +2
Query: 104 DTLLKIYRTKMQDG-ILHDAKAINYGIVKEEEQYVYYANYS 223
D + I R K G + HD +NY ++ E++ + N S
Sbjct: 83 DNFVNIIRRKSGGGTVFHDFGNLNYSVLMNREEFSHTENAS 123
>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 843
Score = 25.4 bits (53), Expect = 6.6
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -3
Query: 193 FLFYNSIIN-SLCIVKNTVLHFSAINLK*SVHINEE 89
FLF N N SLC ++T F + S+HI E
Sbjct: 699 FLFSNGSCNTSLCYYESTDPDFGGLKTPMSIHIERE 734
>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1032
Score = 25.4 bits (53), Expect = 6.6
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = +2
Query: 248 EQRLN*LYGDIRVPFLLLINS-IRMAFLGAVSERMRNLKHRRGEIILQFLPTINNHVITS 424
E L Y ++ F L+ N +R F AV +++ N K E I+ LPT +NH++
Sbjct: 185 EDNLPEWYFEVHSDFCLVWNDLVRRVF--AV-QQLINCKKLEIEDIVNKLPTGSNHMVEE 241
Query: 425 SVLQTAWVPYLNSLGTRLLR 484
+ L + N R R
Sbjct: 242 TFLSLPVITVFNGKKNRKQR 261
>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 923
Score = 25.0 bits (52), Expect = 8.8
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = +2
Query: 95 VNMDTLLKIYRTKMQDGILHDAKAINYGIVKEEEQYVYYANYSNTFLYHNEEQRL 259
+NMD LL Y TK D + +NY ++ Y + N ++F+ +++RL
Sbjct: 289 MNMDILLDSYLTKAMDIHATFIQKLNYDLI--NLLYEPFHNIYSSFIKPIDDRRL 341
>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 498
Score = 25.0 bits (52), Expect = 8.8
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Frame = +3
Query: 318 WPFWVQSLRECVTLSIAVAKLYYNFYQQLTTTLL--LRASYKRLGFH 452
WP W + EC L++ V + F + T LR + K G H
Sbjct: 214 WPLWTIVIIECFILTLDVFLIKETFGPVILATKAKNLRLTTKNWGLH 260
>SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 128
Score = 25.0 bits (52), Expect = 8.8
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = -3
Query: 199 LLFLFYNSIINSLCIVKN 146
++FLF N +++ +C VKN
Sbjct: 38 IIFLFLNYVVDIVCYVKN 55
>SPAC12B10.02c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 235
Score = 25.0 bits (52), Expect = 8.8
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 275 DIRVPFLLLINSIRMAFLGAVSERMRNLKHR 367
DIR P L ++SIR + A++ + RNL +
Sbjct: 10 DIRRPTLAELSSIRSIAMNALNGQSRNLSQK 40
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,680,845
Number of Sequences: 5004
Number of extensions: 57351
Number of successful extensions: 163
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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