Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_E14
         (618 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0528 - 29782382-29782864,29782994-29783092,29783319-297833...    30   1.3  
08_01_0914 + 9010613-9013316,9013537-9013748                           28   5.2  

>02_05_0528 -
           29782382-29782864,29782994-29783092,29783319-29783387,
           29783781-29783888,29783965-29784274,29784772-29784812,
           29784886-29784942,29785290-29785448,29785587-29785655,
           29785728-29785877,29785967-29786098,29786347-29786433,
           29786516-29786686,29786760-29786960,29787348-29787416,
           29787510-29787618,29787887-29788005,29788676-29788780,
           29789377-29789755,29790022-29790150,29790223-29790402,
           29791310-29791469,29791604-29791744,29791832-29792021,
           29792100-29792161,29792879-29793107
          Length = 1335

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = +2

Query: 305 NSIRMAFLGAVSERMRNLKHRRGEIILQFLPTINNHVITSSVLQTA 442
           N I + +LG V++ +++L H RG +  + +     HV+   + Q+A
Sbjct: 739 NGINVRYLGKVADMIKHLPHLRGLLSSEIIVRSAKHVVKEILRQSA 784


>08_01_0914 + 9010613-9013316,9013537-9013748
          Length = 971

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = -3

Query: 208 IHILLFLFYNSIINSLCIVKNTVLHFSAINLK*SVHINEELWIN 77
           +H+L+F    ++I+S+C +  T   F    +K +V  NE L++N
Sbjct: 656 LHVLIFCIVGTLISSMCCM--TAYCFIKRKMKLNVVDNENLFLN 697


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,272,697
Number of Sequences: 37544
Number of extensions: 329294
Number of successful extensions: 761
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)