Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_E14
         (618 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10193| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.32 
SB_39167| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.99 
SB_50960| Best HMM Match : Pkinase (HMM E-Value=0)                     29   3.0  
SB_47095| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_37864| Best HMM Match : Extensin_2 (HMM E-Value=0.064)              28   7.0  
SB_49621| Best HMM Match : 7tm_1 (HMM E-Value=6e-12)                   27   9.2  
SB_19443| Best HMM Match : Adap_comp_sub (HMM E-Value=2.2e-20)         27   9.2  
SB_22879| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_10193| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 831

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -2

Query: 299 VKGMEPEYLHKVSSTSVLHYGKGK--CWNSWRNTHTALPLLQFHN**PLHR 153
           +K ++PE LH    T+   YGKGK   W +W       P LQF    P H+
Sbjct: 655 LKSIQPE-LHLGCDTTSSFYGKGKLTAWQTWDIYKDVTPTLQFLALNPFHQ 704


>SB_39167| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 960

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 27/81 (33%), Positives = 35/81 (43%)
 Frame = -3

Query: 430 DARSNNVVVNCW*KL*YNFATAMLKVTHSLRDCTQKGHANGINK*KEWNPNISIKLVQPL 251
           DA S N   +C     YN AT       S  D T   +A   N    WN NIS++L  P 
Sbjct: 608 DATSYNNATSCNDATSYNNAT-------SCNDATLYNNATSCNDATSWNLNISVQLSTP- 659

Query: 250 FFIMVKESVGIVGVIHILLFL 188
                  S G++ +  ILLF+
Sbjct: 660 ------PSGGVLNMARILLFV 674


>SB_50960| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 632

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
 Frame = +2

Query: 188 EEEQYVYYANYSNTFLYHNEEQRLN*LYGDIRVPFLLL--INSIRMAFLGAVSERMRNLK 361
           EEE+ V+YA      L H   QR+  +Y D++   LLL     +R++ LG ++ ++RN +
Sbjct: 183 EEERAVFYAAQVTLGLIHLHSQRI--VYRDLKPENLLLDDYGHVRISDLG-LAVQIRNGE 239

Query: 362 HRRGEI 379
             RG +
Sbjct: 240 TIRGRV 245


>SB_47095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 535

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 19/86 (22%), Positives = 38/86 (44%)
 Frame = +2

Query: 206 YYANYSNTFLYHNEEQRLN*LYGDIRVPFLLLINSIRMAFLGAVSERMRNLKHRRGEIIL 385
           YY N  N  L++N +      + D+ VPF +  +    + +   ++         G+ + 
Sbjct: 133 YYNNLINELLHYNIQPVATIYHWDLPVPFRMAGSWTNSSIIEHFNDYAEICFKNFGDRVK 192

Query: 386 QFLPTINNHVITSSVLQTAWVPYLNS 463
           +++ TIN   I    ++T W P  +S
Sbjct: 193 KWI-TINEPAIELLFMKTHWAPPASS 217


>SB_37864| Best HMM Match : Extensin_2 (HMM E-Value=0.064)
          Length = 1230

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 406 QPRYYFERLTNGLGSIPEFSWY 471
           QP YY   + NG  + P F WY
Sbjct: 645 QPTYYAAYMQNGFKASPGFGWY 666


>SB_49621| Best HMM Match : 7tm_1 (HMM E-Value=6e-12)
          Length = 316

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 226 VGIVGVIHILLFLFYNSIINSLCIVKNTV 140
           VG + + +ILLF     +I ++C+V NTV
Sbjct: 168 VGFLALNNILLFKVVGCVIITICLVLNTV 196


>SB_19443| Best HMM Match : Adap_comp_sub (HMM E-Value=2.2e-20)
          Length = 216

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 320 AFLGAVSERMRNLKHRRGEIILQFLPTINNHVITS 424
           A   AVS R  N+K+R+ E+ L  + ++N  V +S
Sbjct: 96  ALTNAVSWRGDNIKYRKNEVFLDVIESVNLMVSSS 130


>SB_22879| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 80

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/52 (26%), Positives = 30/52 (57%)
 Frame = -3

Query: 226 VGIVGVIHILLFLFYNSIINSLCIVKNTVLHFSAINLK*SVHINEELWINFI 71
           + I+ +I+I++ +    IIN + I+ N +++   IN+   ++I   + IN I
Sbjct: 24  INIIIIINIIINIIIIIIINIIIIIINIIINIIIINIIIIINIIINIIINII 75


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,433,146
Number of Sequences: 59808
Number of extensions: 410350
Number of successful extensions: 909
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)