Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_E14
         (618 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z29117-11|CAA82382.1|  307|Caenorhabditis elegans Hypothetical p...    29   3.5  
Z83115-4|CAB05557.3|  422|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z81517-7|CAE11306.1|  329|Caenorhabditis elegans Hypothetical pr...    27   8.1  
L26291-1|AAA72418.1|  422|Caenorhabditis elegans protein ( Caeno...    27   8.1  
AF003130-2|AAB54125.2|  426|Caenorhabditis elegans Adaptin, mu/m...    27   8.1  

>Z29117-11|CAA82382.1|  307|Caenorhabditis elegans Hypothetical
           protein C48B4.11 protein.
          Length = 307

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 324 FWVQSLRECVTLSIAVAKLYYNFYQQLTTTLLLRASYK 437
           F  QS+  CV + + V  +YY FY + T   L   ++K
Sbjct: 66  FQYQSVAYCVPIFLFVTSIYYEFYPKETHEFLESFNFK 103


>Z83115-4|CAB05557.3|  422|Caenorhabditis elegans Hypothetical
           protein K11D2.3a protein.
          Length = 422

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 317 MAFLGAVSERMRNLKHRRGEIILQFLPTIN 406
           MA   AVS R   +K+R+ E+ L  + ++N
Sbjct: 150 MAVTNAVSWRSEGIKYRKNEVFLDVIESVN 179


>Z81517-7|CAE11306.1|  329|Caenorhabditis elegans Hypothetical
           protein F28B1.8 protein.
          Length = 329

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 283 PNISIKLV-QPLFFIMVKESVGIVGVIHILLFLFYNSII 170
           PNI  +   +P+F + +   V I   I I++FLF N II
Sbjct: 166 PNIPAEFKSRPMFVLSIDIGVPIAEFILIIIFLFSNGII 204


>L26291-1|AAA72418.1|  422|Caenorhabditis elegans protein (
           Caenorhabditis elegans(unc-101) mRNA, complete cds. ).
          Length = 422

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 317 MAFLGAVSERMRNLKHRRGEIILQFLPTIN 406
           MA   AVS R   +K+R+ E+ L  + ++N
Sbjct: 150 MAVTNAVSWRSEGIKYRKNEVFLDVIESVN 179


>AF003130-2|AAB54125.2|  426|Caenorhabditis elegans Adaptin,
           mu/medium chain (clathrinassociated complex) protein 1
           protein.
          Length = 426

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 317 MAFLGAVSERMRNLKHRRGEIILQFLPTIN 406
           MA   AVS R   +K+R+ E+ L  + ++N
Sbjct: 149 MAVTNAVSWRSEGIKYRKNEVFLDVIESVN 178


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,419,279
Number of Sequences: 27780
Number of extensions: 303757
Number of successful extensions: 772
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)