Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_E14
         (618 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39460.1 68418.m04779 F-box family protein contains Pfam:PF00...    31   0.46 
At5g39480.1 68418.m04781 F-box family protein contains Pfam:PF00...    31   0.61 
At4g24180.1 68417.m03470 pathogenesis-related thaumatin family p...    31   0.81 
At5g01770.1 68418.m00096 transducin family protein / WD-40 repea...    29   1.9  
At3g18370.1 68416.m02336 C2 domain-containing protein contains P...    29   1.9  
At5g13700.1 68418.m01595 polyamine oxidase, putative similar to ...    28   5.7  

>At5g39460.1 68418.m04779 F-box family protein contains Pfam:PF00646
           F-box domain ; similar to SKP1 interacting partner 2
           (SKIP2) TIGR_Ath1:At5g67250
          Length = 571

 Score = 31.5 bits (68), Expect = 0.46
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +3

Query: 153 TMQRLLIMEL*KRKSSMCITPTIPTLSFTIMK 248
           T+QR+ + E+ K+    C++P +PT +FT  K
Sbjct: 522 TLQRINLGEILKKSLGSCVSPLLPTKNFTYTK 553


>At5g39480.1 68418.m04781 F-box family protein contains Pfam:PF00646
           F-box domain ; similar to SKP1 interacting partner 2
           (SKIP2) TIGR_Ath1:At5g67250
          Length = 568

 Score = 31.1 bits (67), Expect = 0.61
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +3

Query: 114 LRFIALKCKTVFFTMQRLLIMEL*KRKSSMCITPTIPTLSFTIMK 248
           L F+  + K V  T+QRL + E+ K+    C+ P  P+ +FT M+
Sbjct: 507 LAFVWKETKVVI-TLQRLNLTEILKKGLGSCVPPLPPSKNFTYMR 550


>At4g24180.1 68417.m03470 pathogenesis-related thaumatin family
           protein similar to SP|P28493 Pathogenesis-related
           protein 5 precursor (PR-5) {Arabidopsis thaliana};
           contains Pfam profile PF00314: Thaumatin family
          Length = 255

 Score = 30.7 bits (66), Expect = 0.81
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 498 GIVTSLNRRVPREFRYGTQAVCKT 427
           G VT LN++ P E R+G+ + CK+
Sbjct: 165 GCVTDLNQKCPTELRFGSGSACKS 188


>At5g01770.1 68418.m00096 transducin family protein / WD-40 repeat
            family protein similar to WD-repeat protein mip1
            (SP:P87141) [Schizosaccharomyces pombe]
          Length = 1354

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = +1

Query: 436  NGLGSIPEFSWYSPIKTGYYPLMTSYYFPFAQRPDNYNLHSVXNYEANTVLGHF 597
            +GL +IP  +W +  +TG    +   + P     D      V NYE  T+L  F
Sbjct: 1004 SGLSNIPIANWDTKFETGTKTALLHPFSPIVVAADENERIRVWNYEEATLLNGF 1057


>At3g18370.1 68416.m02336 C2 domain-containing protein contains Pfam
           profile: PF00168 C2 domain
          Length = 815

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
 Frame = +3

Query: 288 HSFYLLIPFAWPF-----WVQSLRECVTLSIAV-AKLYYNFYQQLTTTLLLRASYKRLGF 449
           HS  LL+P    F     WV +    V L +AV A L Y  YQ+      L   +++  F
Sbjct: 28  HSLLLLVPLVLAFWAIERWVFAFSNWVPLVVAVWASLQYGSYQRALLAEDLTKKWRQTVF 87

Query: 450 HT*ILLVLAY*DWL 491
           +   +  L +  WL
Sbjct: 88  NASTITPLEHCQWL 101


>At5g13700.1 68418.m01595 polyamine oxidase, putative similar to
           SP|O64411 Polyamine oxidase precursor (EC 1.5.3.11) from
           Zea mays
          Length = 472

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +2

Query: 71  YEVYPQFFVNMDTLLKIYRTKMQDGILHDAKAINYGIVKEEEQYVYYANY 220
           Y++  +F V     +  YR K+   +    ++ N  +VK E+  VY ANY
Sbjct: 188 YKMAEEFLVTSHGNILDYRLKLNQVVREVQQSRNGVVVKTEDGSVYEANY 237


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,589,837
Number of Sequences: 28952
Number of extensions: 283315
Number of successful extensions: 790
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)