Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_E13
(393 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 34 0.009
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 32 0.028
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 32 0.028
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 32 0.037
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 32 0.037
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 32 0.037
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 30 0.15
SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr 2... 29 0.19
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 29 0.19
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 29 0.26
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 29 0.34
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 27 0.79
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 27 1.0
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||... 26 1.8
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy... 25 5.5
SPAC22F3.07c |atp20||F0-ATPase subunit G|Schizosaccharomyces pom... 25 5.5
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 24 7.3
SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA methyltransfera... 24 7.3
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce... 24 7.3
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar... 24 9.7
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 24 9.7
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po... 24 9.7
SPBC3B9.03 |||signal recognition particle receptor alpha subunit... 24 9.7
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 33.9 bits (74), Expect = 0.009
Identities = 12/29 (41%), Positives = 24/29 (82%)
Frame = +3
Query: 303 KQKPFKVMVLGQSGVGKSALVVRFITRRF 389
K+ KV++LG+SGVGK++++ +++ R+F
Sbjct: 5 KKHLLKVIILGESGVGKTSIMNQYVNRKF 33
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 32.3 bits (70), Expect = 0.028
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +3
Query: 309 KPFKVMVLGQSGVGKSALVVRFITRRFI 392
+ +K++V+G GVGKSAL ++ I F+
Sbjct: 7 REYKLVVVGDGGVGKSALTIQLIQSHFV 34
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 32.3 bits (70), Expect = 0.028
Identities = 12/24 (50%), Positives = 20/24 (83%)
Frame = +3
Query: 318 KVMVLGQSGVGKSALVVRFITRRF 389
KV++LG SGVGK+ L+ +F+ ++F
Sbjct: 10 KVVILGDSGVGKTCLMNQFVNQKF 33
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 31.9 bits (69), Expect = 0.037
Identities = 13/24 (54%), Positives = 20/24 (83%)
Frame = +3
Query: 318 KVMVLGQSGVGKSALVVRFITRRF 389
K+++LG S VGKS+LV+RF+ +F
Sbjct: 16 KLVLLGDSAVGKSSLVLRFVKDQF 39
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 31.9 bits (69), Expect = 0.037
Identities = 12/20 (60%), Positives = 18/20 (90%)
Frame = +3
Query: 315 FKVMVLGQSGVGKSALVVRF 374
FK++++G SGVGKS L++RF
Sbjct: 9 FKLLLIGDSGVGKSCLLLRF 28
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 31.9 bits (69), Expect = 0.037
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +3
Query: 315 FKVMVLGQSGVGKSALVVRFITRRF 389
FK +++G SGVGKS L++RF F
Sbjct: 11 FKTVLIGDSGVGKSNLLMRFTRNEF 35
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 29.9 bits (64), Expect = 0.15
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +3
Query: 309 KPFKVMVLGQSGVGKSALVVRFITRRF 389
+ FK++ LG+ VGK++L+ RF+ +F
Sbjct: 10 RKFKLVFLGEQSVGKTSLITRFMYDQF 36
>SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 202
Score = 29.5 bits (63), Expect = 0.19
Identities = 17/35 (48%), Positives = 23/35 (65%)
Frame = +3
Query: 273 SSLAKLVLYPKQKPFKVMVLGQSGVGKSALVVRFI 377
SS+A ++ K KP V+V G SGVGKS L+ R +
Sbjct: 7 SSVASKLVTLKLKP--VVVFGPSGVGKSTLLKRLL 39
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 29.5 bits (63), Expect = 0.19
Identities = 11/19 (57%), Positives = 17/19 (89%)
Frame = +3
Query: 318 KVMVLGQSGVGKSALVVRF 374
K++++G SGVGKS L++RF
Sbjct: 11 KLLLIGDSGVGKSCLLLRF 29
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 29.1 bits (62), Expect = 0.26
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +3
Query: 315 FKVMVLGQSGVGKSALVVRFITR 383
F V+VLG+SG GKS LV + R
Sbjct: 96 FNVLVLGESGSGKSTLVNTLLNR 118
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 28.7 bits (61), Expect = 0.34
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 309 KPFKVMVLGQSGVGKSALVVRFITRRFI 392
K ++ VLG VGKS+L V+++ F+
Sbjct: 5 KSRRIAVLGSRSVGKSSLTVQYVENHFV 32
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 27.5 bits (58), Expect = 0.79
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +3
Query: 300 PKQKP-FKVMVLGQSGVGKSALVVRFITRRF 389
P+ P FK++++G G GK+ V R +T F
Sbjct: 4 PQNVPTFKLVLVGDGGTGKTTFVKRHLTGEF 34
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 27.1 bits (57), Expect = 1.0
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 318 KVMVLGQSGVGKSALVVRFITRRF 389
K+++ G SG GKS L+ RF+ ++
Sbjct: 11 KIVLAGPSGTGKSCLLQRFVKNQW 34
>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 331
Score = 26.2 bits (55), Expect = 1.8
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +3
Query: 315 FKVMVLGQSGVGKSALV 365
F VMV+G SG GKS L+
Sbjct: 33 FNVMVVGPSGSGKSTLI 49
>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 794
Score = 24.6 bits (51), Expect = 5.5
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2
Query: 305 TEALQSYGPRTIRSWKIC 358
TEA+ +Y T R+W IC
Sbjct: 488 TEAISNYDSSTGRTWDIC 505
>SPAC22F3.07c |atp20||F0-ATPase subunit G|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 118
Score = 24.6 bits (51), Expect = 5.5
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +3
Query: 66 NFFVAIKLSCVFCAQQ 113
NFF+A+++ +FCA Q
Sbjct: 92 NFFIAVEIVGIFCAGQ 107
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 24.2 bits (50), Expect = 7.3
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -2
Query: 242 NCRHNLFVSALLNRDHFYKATSQIYSSIVGLTHIFVQKIF 123
N +N FV L N + Y S YS++V + K+F
Sbjct: 833 NSTYNEFVEVLRNHELPYSEWSAHYSALVNRISPVLDKLF 872
>SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA
methyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 548
Score = 24.2 bits (50), Expect = 7.3
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -2
Query: 263 CTIIHRHNCRHNLFVSALLN 204
C+++ + N+FVSALLN
Sbjct: 423 CSVLRSQSPPQNIFVSALLN 442
>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 24.2 bits (50), Expect = 7.3
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 306 QKPFKVMVLGQSGVGKSALVVRFITRR 386
+K V +LG S GKS+L+ RR
Sbjct: 237 RKGINVAILGPSNAGKSSLINLLANRR 263
>SPMIT.06 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 807
Score = 23.8 bits (49), Expect = 9.7
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -2
Query: 230 NLFVSALLNRDHFYKATSQIYSSIVGLTH 144
NL+ LLNRD F A +++ S+ +TH
Sbjct: 235 NLYKDFLLNRDMFLIAYNKLKSNPGMMTH 263
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 23.8 bits (49), Expect = 9.7
Identities = 11/47 (23%), Positives = 24/47 (51%)
Frame = +3
Query: 237 TIMSMNNSTSPKSSLAKLVLYPKQKPFKVMVLGQSGVGKSALVVRFI 377
T +++ P + +LY ++ +VLG +G GK+ + +F+
Sbjct: 16 TPLNIQKKLLPITKYRNQLLYAVEQNQITIVLGHTGCGKTTQIPQFL 62
>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1564
Score = 23.8 bits (49), Expect = 9.7
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 185 LYKNDLDSTVQRQINYGDNYVY 250
L+ +DL +T + YGDNY Y
Sbjct: 1138 LHISDLRNTGLFPLRYGDNYFY 1159
>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
Srp101|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 23.8 bits (49), Expect = 9.7
Identities = 7/23 (30%), Positives = 16/23 (69%)
Frame = +3
Query: 303 KQKPFKVMVLGQSGVGKSALVVR 371
+ +P+ + ++G +GVGKS + +
Sbjct: 339 ENRPYTISLIGVNGVGKSTTLAK 361
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,660,439
Number of Sequences: 5004
Number of extensions: 32842
Number of successful extensions: 94
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -