Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_E12
         (613 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    31   0.13 
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    27   2.1  
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz...    26   3.7  
SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein L10a...    26   4.9  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    26   4.9  
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    26   4.9  
SPAC589.06c |||pho88 family protein|Schizosaccharomyces pombe|ch...    26   4.9  
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces...    26   4.9  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   6.5  

>SPAC17C9.03 |tif471||translation initiation factor eIF4G
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 31.1 bits (67), Expect = 0.13
 Identities = 23/89 (25%), Positives = 39/89 (43%)
 Frame = -3

Query: 290  RSQEDLDNGISGNIGLNVDGNTERLVVESWLTNLEVVWVTSLNLFFGQEYTVSGIKLAIV 111
            R QED + G   N+     G  E +  E ++          L  F G+ + +S +   I+
Sbjct: 1109 RCQEDFERGWKANLPSGKAGEAEIMSDEYYVAAAIKRRGLGLVRFIGELFKLSMLSEKIM 1168

Query: 110  KECD*FLNDNIIDFNADEMKFLLRIRLQV 24
             EC   L  N+ D   +E++ L R+ + V
Sbjct: 1169 HECIKRLLGNVTDPEEEEIESLCRLLMTV 1197


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +3

Query: 270 IKIFLGPKYNDXGFPITLEENWHKFYELDWFTHKIT 377
           + I L P  ND  +  T    WHKF++  WF   +T
Sbjct: 416 LHIELAPAANDIQWHNTYIGRWHKFFQ-GWFITLVT 450


>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 674

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +3

Query: 90  EKLVTFFDYSQFDATNSVFLTKKEIKTSYPHNFKVRQPRLNHKPFSVTID-VXSDIATD 263
           E++V    + QF+A +    T+K + +  P   K R+ RL    F   +D +  D ATD
Sbjct: 591 ERVVLLEAWKQFEAMHGTEDTRKHVSSLMPQVVKKRR-RLEDGSFEEYLDYLFPDTATD 648


>SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 216

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 484 GTFPSSNNFMRSVNGKESSLKSENSFELRTILFCPGV 374
           G FPS  +    + GK + +KS   F+L+ +L C GV
Sbjct: 131 GKFPSPVSHADDLYGKITEVKSTIKFQLKKVL-CLGV 166


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +3

Query: 342 FYELDWFTHKITPGQNKIVRNSNE--FSLFKEDSLPXTDLMKLLD 470
           F  LDWFT+  +  QN+++R S +  F    +  L     +KLL+
Sbjct: 654 FPTLDWFTNDSSVIQNELLRRSVDTYFRYIFQTDLKLEQRIKLLE 698


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 289 LSTTXMDSPSHWKKTGINSTNWIG 360
           LS   +   S+W++T ++ TNW+G
Sbjct: 208 LSVKAIIFASYWQQTVLSITNWLG 231


>SPAC589.06c |||pho88 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 202

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -1

Query: 523 LFGMHSKPSDIYNGTFPSSNNFMRSVNGKESSLKSENSFE 404
           LFG  +KP+    GT  +SNN     +G   +  +EN  E
Sbjct: 160 LFGGGNKPAAAVTGTSSNSNNASAKSDGPTITELNENETE 199


>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = +3

Query: 291 KYNDXGFPITLEENWHKFYELDWFTHKITPGQNKIVRNSNEFSLFKEDSLPXTD 452
           KYN+   P       H  ++L+W T       N + R+  EFS+F  D LP T+
Sbjct: 147 KYNNTMIP-----GAHCTFKLNWATGGGIQHNNFVSRDP-EFSIFVGDLLPTTE 194


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = -3

Query: 245 LNVDGNTERLVVESWLTNLEVVWVTSLNLFFGQEYTVSGI---KLAIVKEC 102
           LN+   TE ++     ++  +V V S N FFG    + G+   K ++ ++C
Sbjct: 309 LNITRKTETILKSLKESSTPLVQVVSFNAFFGVMIAILGVQFFKASLNRQC 359


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,450,168
Number of Sequences: 5004
Number of extensions: 49969
Number of successful extensions: 161
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)