BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= I10A02NGRL0002_E12 (613 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 03_05_0836 - 28088832-28089422,28089626-28089831,28089985-28090330 28 0.97 03_05_0325 + 23135816-23135894,23136161-23136333,23136440-231366... 29 3.8 01_06_0496 - 29795490-29796638,29796811-29796870,29798168-297983... 29 3.8 01_01_0106 + 788967-789555,790139-790162,790339-791411 28 5.1 11_04_0094 + 13418604-13418680,13419331-13419400,13420078-134202... 28 6.7 01_05_0548 + 23149271-23149568,23149766-23149845,23150137-231502... 28 6.7 >03_05_0836 - 28088832-28089422,28089626-28089831,28089985-28090330 Length = 380 Score = 27.9 bits (59), Expect(2) = 0.97 Identities = 11/34 (32%), Positives = 21/34 (61%) Frame = -3 Query: 269 NGISGNIGLNVDGNTERLVVESWLTNLEVVWVTS 168 NG + + G T+R+++ SWL+ LE+ + T+ Sbjct: 224 NGFTEAPETSNSGQTKRVLLSSWLSTLELAYTTA 257 Score = 21.4 bits (43), Expect(2) = 0.97 Identities = 10/31 (32%), Positives = 18/31 (58%) Frame = -3 Query: 137 VSGIKLAIVKECD*FLNDNIIDFNADEMKFL 45 VSG ++A+ + L+ N++ + DEM L Sbjct: 298 VSGTRIALGDDGSIALSRNVVVLHVDEMLLL 328 >03_05_0325 + 23135816-23135894,23136161-23136333,23136440-23136613, 23136881-23137004,23137090-23137190,23137337-23137423, 23137801-23137896,23138209-23138329,23138475-23138603, 23139458-23139549,23139660-23139771,23140189-23140541, 23140670-23140899,23141179-23141278,23143357-23143411, 23143548-23145496,23145587-23145745,23146514-23146685, 23146758-23147056,23147246-23147521 Length = 1626 Score = 28.7 bits (61), Expect = 3.8 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 1/61 (1%) Frame = -1 Query: 526 NLFGMHSKPSDIYNGTFPSSNNFM-RSVNGKESSLKSENSFELRTILFCPGVILCVNQSS 350 NLF + SD YN SSN M V GKE S +S T+ F G + N ++ Sbjct: 507 NLFVPEGRSSDNYNNDAASSNPLMCDGVGGKELDDDSSSSKGTHTVKF-DGQLTSSNATT 565 Query: 349 S 347 S Sbjct: 566 S 566 >01_06_0496 - 29795490-29796638,29796811-29796870,29798168-29798371, 29798739-29798984,29799375-29799464 Length = 582 Score = 28.7 bits (61), Expect = 3.8 Identities = 15/38 (39%), Positives = 21/38 (55%) Frame = +3 Query: 351 LDWFTHKITPGQNKIVRNSNEFSLFKEDSLPXTDLMKL 464 +D F +T KI RNS +FS DS+P + L +L Sbjct: 278 VDSFQTNMTVEPEKIKRNSRKFSSSAADSVPDSQLSEL 315 >01_01_0106 + 788967-789555,790139-790162,790339-791411 Length = 561 Score = 28.3 bits (60), Expect = 5.1 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 2/68 (2%) Frame = +3 Query: 201 PRLNHKPFSVTIDVXSDIATDA--VIKIFLGPKYNDXGFPITLEENWHKFYELDWFTHKI 374 P L + F V I SD+ + V+++ G + D G +N H+ Y L+W K+ Sbjct: 437 PELYSRNFGV-ISYKSDVYSFGMLVLEMVSGRRNLDPGI-----DNQHEVYFLEWIYEKV 490 Query: 375 TPGQNKIV 398 GQN ++ Sbjct: 491 FTGQNLLI 498 >11_04_0094 + 13418604-13418680,13419331-13419400,13420078-13420236, 13420334-13420445,13420530-13420649,13422249-13422406, 13422987-13423217,13424621-13424713,13425088-13425227, 13426331-13426401,13427554-13427637,13427752-13427846 Length = 469 Score = 27.9 bits (59), Expect = 6.7 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%) Frame = -1 Query: 607 SWLLDSNGYTKTKNW-NGYPPSVPLGNINLFGMHSKPSDIY 488 SW L + K KNW NG ++ +G FG S P DI+ Sbjct: 41 SWCLQTKTQVKVKNWVNGTEGTIVVGLSARFGA-SVPRDIH 80 >01_05_0548 + 23149271-23149568,23149766-23149845,23150137-23150223, 23150421-23150729,23150774-23150899,23151977-23152360, 23152603-23152608 Length = 429 Score = 27.9 bits (59), Expect = 6.7 Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 5/78 (6%) Frame = +3 Query: 96 LVTFFDYSQFDATNSVFLTK-----KEIKTSYPHNFKVRQPRLNHKPFSVTIDVXSDIAT 260 L F +S F ++++ + + ++KT ++ ++ PRL + S+ DV + + Sbjct: 64 LAAVFSFSSFTSSSNYVIRECLGSVLDLKTVATIDWSMKTPRLQYYTSSMVDDVFTRLGE 123 Query: 261 DAVIKIFLGPKYNDXGFP 314 D +K + Y G P Sbjct: 124 DIKVKPWAHTVYGKNGIP 141 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,644,277 Number of Sequences: 37544 Number of extensions: 279842 Number of successful extensions: 717 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 694 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 717 length of database: 14,793,348 effective HSP length: 79 effective length of database: 11,827,372 effective search space used: 1466594128 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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