Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_E12
         (613 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0836 - 28088832-28089422,28089626-28089831,28089985-28090330     28   0.97 
03_05_0325 + 23135816-23135894,23136161-23136333,23136440-231366...    29   3.8  
01_06_0496 - 29795490-29796638,29796811-29796870,29798168-297983...    29   3.8  
01_01_0106 + 788967-789555,790139-790162,790339-791411                 28   5.1  
11_04_0094 + 13418604-13418680,13419331-13419400,13420078-134202...    28   6.7  
01_05_0548 + 23149271-23149568,23149766-23149845,23150137-231502...    28   6.7  

>03_05_0836 - 28088832-28089422,28089626-28089831,28089985-28090330
          Length = 380

 Score = 27.9 bits (59), Expect(2) = 0.97
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -3

Query: 269 NGISGNIGLNVDGNTERLVVESWLTNLEVVWVTS 168
           NG +     +  G T+R+++ SWL+ LE+ + T+
Sbjct: 224 NGFTEAPETSNSGQTKRVLLSSWLSTLELAYTTA 257



 Score = 21.4 bits (43), Expect(2) = 0.97
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -3

Query: 137 VSGIKLAIVKECD*FLNDNIIDFNADEMKFL 45
           VSG ++A+  +    L+ N++  + DEM  L
Sbjct: 298 VSGTRIALGDDGSIALSRNVVVLHVDEMLLL 328


>03_05_0325 +
           23135816-23135894,23136161-23136333,23136440-23136613,
           23136881-23137004,23137090-23137190,23137337-23137423,
           23137801-23137896,23138209-23138329,23138475-23138603,
           23139458-23139549,23139660-23139771,23140189-23140541,
           23140670-23140899,23141179-23141278,23143357-23143411,
           23143548-23145496,23145587-23145745,23146514-23146685,
           23146758-23147056,23147246-23147521
          Length = 1626

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = -1

Query: 526 NLFGMHSKPSDIYNGTFPSSNNFM-RSVNGKESSLKSENSFELRTILFCPGVILCVNQSS 350
           NLF    + SD YN    SSN  M   V GKE    S +S    T+ F  G +   N ++
Sbjct: 507 NLFVPEGRSSDNYNNDAASSNPLMCDGVGGKELDDDSSSSKGTHTVKF-DGQLTSSNATT 565

Query: 349 S 347
           S
Sbjct: 566 S 566


>01_06_0496 -
           29795490-29796638,29796811-29796870,29798168-29798371,
           29798739-29798984,29799375-29799464
          Length = 582

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 351 LDWFTHKITPGQNKIVRNSNEFSLFKEDSLPXTDLMKL 464
           +D F   +T    KI RNS +FS    DS+P + L +L
Sbjct: 278 VDSFQTNMTVEPEKIKRNSRKFSSSAADSVPDSQLSEL 315


>01_01_0106 + 788967-789555,790139-790162,790339-791411
          Length = 561

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = +3

Query: 201 PRLNHKPFSVTIDVXSDIATDA--VIKIFLGPKYNDXGFPITLEENWHKFYELDWFTHKI 374
           P L  + F V I   SD+ +    V+++  G +  D G      +N H+ Y L+W   K+
Sbjct: 437 PELYSRNFGV-ISYKSDVYSFGMLVLEMVSGRRNLDPGI-----DNQHEVYFLEWIYEKV 490

Query: 375 TPGQNKIV 398
             GQN ++
Sbjct: 491 FTGQNLLI 498


>11_04_0094 +
           13418604-13418680,13419331-13419400,13420078-13420236,
           13420334-13420445,13420530-13420649,13422249-13422406,
           13422987-13423217,13424621-13424713,13425088-13425227,
           13426331-13426401,13427554-13427637,13427752-13427846
          Length = 469

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -1

Query: 607 SWLLDSNGYTKTKNW-NGYPPSVPLGNINLFGMHSKPSDIY 488
           SW L +    K KNW NG   ++ +G    FG  S P DI+
Sbjct: 41  SWCLQTKTQVKVKNWVNGTEGTIVVGLSARFGA-SVPRDIH 80


>01_05_0548 +
           23149271-23149568,23149766-23149845,23150137-23150223,
           23150421-23150729,23150774-23150899,23151977-23152360,
           23152603-23152608
          Length = 429

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
 Frame = +3

Query: 96  LVTFFDYSQFDATNSVFLTK-----KEIKTSYPHNFKVRQPRLNHKPFSVTIDVXSDIAT 260
           L   F +S F ++++  + +      ++KT    ++ ++ PRL +   S+  DV + +  
Sbjct: 64  LAAVFSFSSFTSSSNYVIRECLGSVLDLKTVATIDWSMKTPRLQYYTSSMVDDVFTRLGE 123

Query: 261 DAVIKIFLGPKYNDXGFP 314
           D  +K +    Y   G P
Sbjct: 124 DIKVKPWAHTVYGKNGIP 141


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,644,277
Number of Sequences: 37544
Number of extensions: 279842
Number of successful extensions: 717
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)