Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_E12
(613 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17069| Best HMM Match : Transposase_8 (HMM E-Value=7.7) 31 0.56
SB_7722| Best HMM Match : TFR_dimer (HMM E-Value=2.6e-10) 29 3.9
SB_36304| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_49488| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_7240| Best HMM Match : OMPdecase (HMM E-Value=0) 28 6.9
SB_43557| Best HMM Match : Pentapeptide (HMM E-Value=8.1e-11) 27 9.1
SB_23914| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_8348| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_57031| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
>SB_17069| Best HMM Match : Transposase_8 (HMM E-Value=7.7)
Length = 733
Score = 31.5 bits (68), Expect = 0.56
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = -1
Query: 601 LLDSNGYTKTKNWNGYPPSVPLGNINLFGMHSKPSDIYNGTFPSS--NNFMRSVNGKE 434
++DS G N+ G+ VP G++ L+G H+ + FP S N+F+ V G+E
Sbjct: 439 IVDSFGTEAQFNYAGFTEKVPGGSMALWGRHNLNLKQFMTMFPHSPDNSFLGFVVGEE 496
>SB_7722| Best HMM Match : TFR_dimer (HMM E-Value=2.6e-10)
Length = 688
Score = 28.7 bits (61), Expect = 3.9
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -3
Query: 278 DLDNGISGNIGLNVDGN 228
++D G+SGN LNVDG+
Sbjct: 397 NIDTGVSGNFSLNVDGS 413
>SB_36304| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 98
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 327 ENWHKFYELDWFTHKITPGQNKIVRN 404
+ WHK YELD F K + N I+RN
Sbjct: 66 KEWHK-YELDKFMEKTSSYHNTILRN 90
>SB_49488| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1228
Score = 27.9 bits (59), Expect = 6.9
Identities = 17/99 (17%), Positives = 44/99 (44%), Gaps = 1/99 (1%)
Frame = +3
Query: 120 QFDATNSVFLTKKEIKTSYPHNFKVRQPRLNHKPFSVTIDVXSDIATDAVIKIFLGPKYN 299
+ D +SV + + + S + +++ ++ + + I V + + + I Y
Sbjct: 273 ELDTGSSVSIIPRNVYESTCKHLELKPAKVKLRTYGSEIIVPMGVVSARTLVITTNAMYV 332
Query: 300 DXGFPITL-EENWHKFYELDWFTHKITPGQNKIVRNSNE 413
G + L +W + ++L+W + K+ G+N + + E
Sbjct: 333 VDGPRVALFGRSWLRLFKLEWPSIKLVQGKNTALSDLTE 371
Score = 27.9 bits (59), Expect = 6.9
Identities = 17/99 (17%), Positives = 44/99 (44%), Gaps = 1/99 (1%)
Frame = +3
Query: 120 QFDATNSVFLTKKEIKTSYPHNFKVRQPRLNHKPFSVTIDVXSDIATDAVIKIFLGPKYN 299
+ D +SV + + + S + +++ ++ + + I V + + + I Y
Sbjct: 756 ELDTGSSVSIIPRNVYESTCKHLELKPAKVKLRTYGSEIIVPMGVVSARTLVITTNAMYV 815
Query: 300 DXGFPITL-EENWHKFYELDWFTHKITPGQNKIVRNSNE 413
G + L +W + ++L+W + K+ G+N + + E
Sbjct: 816 VDGPRVALFGRSWLRLFKLEWPSIKLVQGKNTALSDLTE 854
>SB_7240| Best HMM Match : OMPdecase (HMM E-Value=0)
Length = 474
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +3
Query: 51 LHFVGVKINDVVVEKLVTFFDYSQFDATNSV 143
LH G K++D VVE + F + +QF AT+ V
Sbjct: 181 LHAQG-KVDDAVVESVREFLEANQFKATSDV 210
>SB_43557| Best HMM Match : Pentapeptide (HMM E-Value=8.1e-11)
Length = 129
Score = 27.5 bits (58), Expect = 9.1
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +1
Query: 1 VTLTHSSIT*SLILKRNFISSALKSMMLSLRN*SHS-LTIANLMPLTV 141
+TLTHS++T + N S L L+ N +HS LT + L LT+
Sbjct: 10 LTLTHSNLTHLTLTHSNLTHSTLTHSNLTHLNLTHSTLTYSTLTHLTL 57
>SB_23914| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 587
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/27 (44%), Positives = 20/27 (74%), Gaps = 2/27 (7%)
Frame = -3
Query: 278 DLDNGISGNIGLNVDGNT--ERLVVES 204
++D G+ GN LN+DG+ E+L+VE+
Sbjct: 340 NIDVGVGGNFTLNMDGSALIEKLLVET 366
>SB_8348| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 455
Score = 27.5 bits (58), Expect = 9.1
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +3
Query: 288 PKYNDXGFPITLEENWHKFYELDWFTHKITPGQNKIVR-NSNEFSLFKEDSLPXTDLMKL 464
PK P + E+ KFYE + + +I PG+ + V N N + ++ L +L +L
Sbjct: 160 PKKGGRALPSDVLEHIVKFYESEEYP-RICPGKKEFVSVNENNVKVHRQKQLLLVNLHEL 218
Query: 465 LDEGK 479
E K
Sbjct: 219 YVEYK 223
>SB_57031| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1495
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -3
Query: 320 CDGESXIVVLRSQEDLDNGISGNIG-LNVDGNTERLVVESW 201
C ES ++LR+ ED+ + GN+G LN+ T+ V SW
Sbjct: 815 CGAESNELILRTFEDVPSVAPGNVGTLNLTSMTDLRV--SW 853
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,486,138
Number of Sequences: 59808
Number of extensions: 345022
Number of successful extensions: 919
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -