Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_E11
(387 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 28 0.59
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|... 27 1.4
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo... 27 1.4
SPAC31G5.14 |gcv1|n313|glycine decarboxylase T subunit|Schizosac... 26 1.8
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce... 25 3.1
SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyce... 25 3.1
SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces po... 25 4.1
SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosacchar... 25 4.1
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c... 24 7.2
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 24 7.2
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 24 7.2
SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces po... 24 9.6
SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces pombe... 24 9.6
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces... 24 9.6
SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces po... 24 9.6
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 27.9 bits (59), Expect = 0.59
Identities = 13/40 (32%), Positives = 16/40 (40%)
Frame = +1
Query: 268 PQRRADRNNYKKKSLLPTYMLETGKGDIETNEIPDNTVNG 387
P+ R R NY + PTYM + P N NG
Sbjct: 339 PRFRNSRRNYNNQGAYPTYMSNGRSANQSPRNNPQNVNNG 378
>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 26.6 bits (56), Expect = 1.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 304 KSLLPTYMLETGKGDIETNEIPDNTV 381
+ L PTYML GDI + PD+ +
Sbjct: 396 RMLFPTYMLRLHLGDISPQKDPDHYI 421
>SPBC13G1.08c |ash2||Ash2-trithorax family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 26.6 bits (56), Expect = 1.4
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = -3
Query: 130 YCTCRRSPRTRYAVSGISACTNLLELSVCSP 38
YC C + R+ S C N+ LS SP
Sbjct: 42 YCYCGKDRNLRFPDLQCSVCLNMFHLSCLSP 72
>SPAC31G5.14 |gcv1|n313|glycine decarboxylase T
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 26.2 bits (55), Expect = 1.8
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -2
Query: 278 LRCGFSWYXSMVEDERVTLRGSLAWLVHSLRK 183
L G Y S ++D + GSL+W++ R+
Sbjct: 253 LEAGMCLYGSDIDDTTSPVEGSLSWIIGKRRR 284
>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 747
Score = 25.4 bits (53), Expect = 3.1
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = +1
Query: 133 QLVEMLVSDMSAQEVC--VFLKLCTNQANDPLNVTRSSST 246
+LV+ +S++ + E+ V L +CTN N+ + + SST
Sbjct: 407 ELVQYALSNVDSDEIPSNVMLSVCTNLINEVASQNKYSST 446
>SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 25.4 bits (53), Expect = 3.1
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 52 KALEGLCTHLSQKLRTECVDFVDTYSNQLVEMLVSD 159
KALE L LSQK + E +DF+ + M ++D
Sbjct: 21 KALESLQRFLSQKKKFERLDFLKLWKGLFYCMWMAD 56
>SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 25.0 bits (52), Expect = 4.1
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +3
Query: 189 QAVHQPGQRSSQRDPFVLDHRXVPRETTAKGRQEQLQEEVS 311
QA++QP Q+ Q+ P E RQ++L+++ +
Sbjct: 147 QALNQPPQQQQQQQQQQHQQHATPSEPVLSKRQQKLRKKAA 187
>SPAC57A7.10c |sec21||coatomer gamma subunit Sec21
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 25.0 bits (52), Expect = 4.1
Identities = 11/49 (22%), Positives = 21/49 (42%)
Frame = +1
Query: 124 YSNQLVEMLVSDMSAQEVCVFLKLCTNQANDPLNVTRSSSTIDXYHEKP 270
Y + L+ + A V ++ T DP++ S++ + YH P
Sbjct: 117 YRPNAIRSLIRVIDANTVPAIERILTTGIVDPISAVASAALVSAYHLYP 165
>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 865
Score = 24.2 bits (50), Expect = 7.2
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -2
Query: 131 LLYVSTKSTHSVRSFWDKCVHKPSRAFRMFASVRLFLSM 15
L+YVS ST S +W V++ + A++ LFL +
Sbjct: 619 LMYVSNSSTESGGGYWRPVVNRILLGLEL-ANIILFLCL 656
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 24.2 bits (50), Expect = 7.2
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Frame = +1
Query: 232 RSSSTIDX--YHEKPQRRADRNNYK 300
RSSS D YH + R DR+NY+
Sbjct: 338 RSSSRSDDREYHRRSDGRYDRSNYR 362
>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1588
Score = 24.2 bits (50), Expect = 7.2
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 67 LCTHLSQKLRTECVDFVDTYSNQLVEMLVSDMSAQEVCV 183
L T++S +++ VD T LVSD +A +C+
Sbjct: 1420 LFTNISPEIKELSVDSTSTLGGLNSSHLVSDQNASVICL 1458
>SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 328
Score = 23.8 bits (49), Expect = 9.6
Identities = 7/28 (25%), Positives = 18/28 (64%)
Frame = -2
Query: 248 MVEDERVTLRGSLAWLVHSLRKTHTSWA 165
++++ +V ++G++ WL +L + WA
Sbjct: 217 LLDENKVLMQGTIHWLHGNLHRWSKCWA 244
>SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 455
Score = 23.8 bits (49), Expect = 9.6
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 306 LLLVIVPVGPSLWFLVVLVYGRGRTG 229
+LLV P+ +L FL+V YG G G
Sbjct: 163 ILLVTSPLNVALNFLLVHYYGLGLKG 188
>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 471
Score = 23.8 bits (49), Expect = 9.6
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +1
Query: 274 RRADRNNYKKKSLLPTYMLETGKGDIE 354
RRA + + K LP++ ++ +GDI+
Sbjct: 371 RRAIQLEFNKNFFLPSFSVDDPRGDID 397
>SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 23.8 bits (49), Expect = 9.6
Identities = 10/26 (38%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +1
Query: 313 LPTYMLETGKGDIETN-EIPDNTVNG 387
LPTY+ + +G ++TN + D + NG
Sbjct: 264 LPTYLEDMARGALDTNGPLYDQSCNG 289
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.128 0.358
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,492,219
Number of Sequences: 5004
Number of extensions: 27814
Number of successful extensions: 68
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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