Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_E11
         (387 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          27   0.075
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   2.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   2.8  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   3.7  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   6.5  

>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 27.1 bits (57), Expect = 0.075
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +1

Query: 67  LCTHLSQKLRTECVDFVDTYSNQLVEMLVS 156
           + THL Q L +E V+ +  +S++LVE+ +S
Sbjct: 110 MVTHLPQTLTSENVEILLEHSSKLVELFLS 139


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 109 DFVDTYSNQLVEMLVSDMSAQEVCVFLKL 195
           D +  Y N+LV  +V+      VC+ LKL
Sbjct: 35  DLLSNY-NKLVRPVVNTSDVLRVCIKLKL 62


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 109 DFVDTYSNQLVEMLVSDMSAQEVCVFLKL 195
           D +  Y N+LV  +V+      VC+ LKL
Sbjct: 35  DLLSNY-NKLVRPVVNTSDVLRVCIKLKL 62


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 103 TRYAVSGISACTNLLE 56
           T Y +SGI  CT+ ++
Sbjct: 424 TSYVISGIVKCTDFVD 439


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = +1

Query: 211 NDPLNVTRSSSTIDXYHEKPQRRADRNNYKKKSLLPTYMLETGKGDIETNEIP-DNTVN 384
           N+  N+T SS T   +        + +N+   +    + ++TG G +E+  +   N VN
Sbjct: 5   NNETNITNSSITETYFVSAYNLNQEDSNWIITNSFIIFTMQTGFGMLESGCVSLKNEVN 63


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.313    0.128    0.358 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,454
Number of Sequences: 438
Number of extensions: 1874
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9391092
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.0 bits)