Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_E10
         (575 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19131| Best HMM Match : No HMM Matches (HMM E-Value=.)             210   8e-55
SB_53143| Best HMM Match : PKD (HMM E-Value=2.7e-18)                   28   4.8  
SB_9978| Best HMM Match : Pkinase (HMM E-Value=3.4e-17)                28   4.8  
SB_38738| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  

>SB_19131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 456

 Score =  210 bits (512), Expect = 8e-55
 Identities = 97/156 (62%), Positives = 120/156 (76%)
 Frame = -2

Query: 574 EVIGRKLPSESEPKPPLYQMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSIKEIPEK 395
           +VIGR +P++    PPLY+MRIF+PD +VA+S+FWYF+ QLK+ KK+ GEIVS ++I EK
Sbjct: 211 QVIGRLMPNKKLTVPPLYKMRIFAPDDVVARSKFWYFISQLKRMKKSQGEIVSCQQIYEK 270

Query: 394 SPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVE 215
            P++IKNFGIWLRY+SRSG HNMYREYRDL+V GAVT CYRDM ARHRAR +SIQI+KVE
Sbjct: 271 KPLQIKNFGIWLRYDSRSGTHNMYREYRDLTVSGAVTACYRDMAARHRARGYSIQIMKVE 330

Query: 214 VIKAAACRRPQVKQFHTSKIGFPLPKRVHQYKRLNT 107
           VI A+  RRP VKQ H   +  P      Q   L+T
Sbjct: 331 VIPASKARRPHVKQMHVYGV-LPYFANFRQLAELST 365


>SB_53143| Best HMM Match : PKD (HMM E-Value=2.7e-18)
          Length = 2111

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 392 TLFWNFLDGYNFTSSL 439
           T+FW+FLDG N T  L
Sbjct: 603 TMFWDFLDGNNLTQEL 618


>SB_9978| Best HMM Match : Pkinase (HMM E-Value=3.4e-17)
          Length = 348

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 146 ATKTRSPIQASQYLCIQEAEHVLYVI 69
           A KTR P   + + C Q  EHV +V+
Sbjct: 227 ANKTRHPFLVNLFACFQTQEHVCFVM 252


>SB_38738| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 210

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/38 (31%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
 Frame = +2

Query: 410 LDGYNFTSSLFELLQLPQEIPET-RFCHNRIRRENPHL 520
           L+ +NF+S + E+  + +++P + R C+  ++ E PHL
Sbjct: 114 LESFNFSSPVEEMENMQKQLPASKRLCYTPLKSE-PHL 150


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,787,031
Number of Sequences: 59808
Number of extensions: 362014
Number of successful extensions: 1222
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1222
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)