Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_E10
         (575 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g34480.1 68415.m04233 60S ribosomal protein L18A (RPL18aB)         184   4e-47
At1g29965.1 68414.m03664 60S ribosomal protein L18A  (RPL18aA) JRW    183   7e-47
At3g14600.1 68416.m01849 60S ribosomal protein L18A (RPL18aC) si...   179   1e-45
At2g39230.1 68415.m04818 pentatricopeptide (PPR) repeat-containi...    32   0.24 
At4g02400.1 68417.m00324 U3 ribonucleoprotein (Utp) family prote...    30   0.96 
At2g35200.1 68415.m04317 expressed protein                             30   0.96 
At1g68740.1 68414.m07857 EXS family protein / ERD1/XPR1/SYG1 fam...    28   3.9  
At5g49770.1 68418.m06164 leucine-rich repeat transmembrane prote...    28   5.1  
At4g02350.1 68417.m00319 exocyst complex subunit Sec15-like fami...    28   5.1  
At1g26870.1 68414.m03277 no apical meristem (NAM) family protein...    27   6.8  
At5g08600.1 68418.m01023 U3 ribonucleoprotein (Utp) family prote...    27   9.0  
At5g04700.1 68418.m00478 hypothetical protein                          27   9.0  
At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta...    27   9.0  
At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta...    27   9.0  
At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta...    27   9.0  

>At2g34480.1 68415.m04233 60S ribosomal protein L18A (RPL18aB)
          Length = 178

 Score =  184 bits (448), Expect = 4e-47
 Identities = 79/144 (54%), Positives = 109/144 (75%)
 Frame = -2

Query: 574 EVIGRKLPSESEPKPPLYQMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSIKEIPEK 395
           +V+GR LP+E + +P +Y+M++++ + + AKS+FWYFLR+LKK KK+ G++++I EI EK
Sbjct: 10  QVVGRALPTEKDVQPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIYEK 69

Query: 394 SPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVE 215
           +P  IKNFGIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R   IQIIK  
Sbjct: 70  NPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTA 129

Query: 214 VIKAAACRRPQVKQFHTSKIGFPL 143
            + A  C+R   KQFH SKI FPL
Sbjct: 130 TVPAKLCKRESTKQFHNSKIKFPL 153


>At1g29965.1 68414.m03664 60S ribosomal protein L18A  (RPL18aA) JRW
          Length = 178

 Score =  183 bits (446), Expect = 7e-47
 Identities = 82/168 (48%), Positives = 118/168 (70%), Gaps = 3/168 (1%)
 Frame = -2

Query: 574 EVIGRKLPSESEPKPPLYQMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSIKEIPEK 395
           +V+GR LP+E + +P +Y+M++++ + ++AKS+FWY+LR+ KK KK+ G++++I EI EK
Sbjct: 10  QVVGRALPTEKDEQPKIYRMKLWATNEVLAKSKFWYYLRRQKKVKKSNGQMLAINEIFEK 69

Query: 394 SPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVE 215
           +P  IKNFGIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R   IQIIK  
Sbjct: 70  NPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTA 129

Query: 214 VIKAAACRRPQVKQFHTSKIGFPL---PKRVHQYKRLNTFAYKRPSTY 80
            + A+ C+R   KQFH SKI FPL     R    K   TF   +P+ +
Sbjct: 130 TVPASLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLKTTFKANKPNLF 177


>At3g14600.1 68416.m01849 60S ribosomal protein L18A (RPL18aC)
           similar to GB:CAA08791 from [Podocoryne carnea]
          Length = 178

 Score =  179 bits (435), Expect = 1e-45
 Identities = 76/144 (52%), Positives = 107/144 (74%)
 Frame = -2

Query: 574 EVIGRKLPSESEPKPPLYQMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSIKEIPEK 395
           +V+GR LP+E++  P +Y+M+++  + + AKS+FWYF+R+LKK KK+ G++++I EI EK
Sbjct: 10  QVVGRALPTENDEHPKIYRMKLWGRNEVCAKSKFWYFMRKLKKVKKSNGQMLAINEIFEK 69

Query: 394 SPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVE 215
           +P  IKN+GIWLRY+SR+G HNMY+EYRD ++ G V Q Y +M +RHR R   IQIIK  
Sbjct: 70  NPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRFPCIQIIKTA 129

Query: 214 VIKAAACRRPQVKQFHTSKIGFPL 143
            + A  C+R   KQFH SKI FPL
Sbjct: 130 TVPAKLCKREITKQFHNSKIKFPL 153


>At2g39230.1 68415.m04818 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 867

 Score = 32.3 bits (70), Expect = 0.24
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -2

Query: 535 KPPLYQMRIFSPDPIVAKSRFWYFL-RQLKKFKKTTGEIVSIKEIPEKSPV 386
           +PP++  R  +P PI +++RF +    Q +    +T E +S  E P K+ V
Sbjct: 11  RPPIFLHRFINPKPISSQTRFLHPPDNQSRDISDSTTETISTLEFPHKTSV 61


>At4g02400.1 68417.m00324 U3 ribonucleoprotein (Utp) family protein
           contains Pfam profile: PF04615 Utp14 protein
          Length = 858

 Score = 30.3 bits (65), Expect = 0.96
 Identities = 15/51 (29%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
 Frame = -2

Query: 454 LKKFKKTTGEIVSIKEIPE-KSPVKIKNFGIWLRYESRSGVHN-MYREYRD 308
           +++F+K   E+++ +E+PE + PV +  +G W   + + G+ + M RE+ D
Sbjct: 679 VEEFEKDKQEVLN-QEVPEPEKPVLVPGWGQWTNVQKKRGLPSWMVREHED 728


>At2g35200.1 68415.m04317 expressed protein
          Length = 201

 Score = 30.3 bits (65), Expect = 0.96
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 511 IFSPDPIVAKSRFWYFLRQLKKFKKT 434
           +FSP P+ +K   WYF   +K F+++
Sbjct: 160 LFSPTPVTSKGNGWYFPSPIKVFRQS 185


>At1g68740.1 68414.m07857 EXS family protein / ERD1/XPR1/SYG1 family
           protein similar to PHO1 protein [Arabidopsis thaliana]
           GI:20069032; contains Pfam profiles PF03105: SPX domain,
           PF03124: EXS family
          Length = 784

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 384 LTGLFSGISLMDTISPVVFLNFFNCLKKYQK 476
           LT LF G++ + T   +  L F N LKK+ K
Sbjct: 293 LTELFKGLNYLKTYRNLNILAFMNILKKFDK 323


>At5g49770.1 68418.m06164 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 946

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +2

Query: 371 KVLNLNRTLFWNFLDGYNFTSSLFELLQLPQEIPETRFCHNRIRRENP 514
           K+ +   TL     DG  FT S+ E L L Q +   R   NR+  + P
Sbjct: 215 KLFSSEMTLLHVLFDGNQFTGSIPESLGLVQNLTVLRLDRNRLSGDIP 262


>At4g02350.1 68417.m00319 exocyst complex subunit Sec15-like family
           protein  contains Pfam profile PF04091: Exocyst complex
           subunit Sec15-like
          Length = 771

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 6/114 (5%)
 Frame = -2

Query: 562 RKLPSESEPKPPLYQMRIF-----SPDPIVAKSRFWYFLRQLKKFKKTTGEIVSIKEIPE 398
           RK     +P+  L+ ++ F     S    V K+ +  F+  +   K    ++ S+K    
Sbjct: 45  RKTFGTGKPETLLHHLKFFARSKESEIEEVCKAHYQDFIHAVDDLKSLLSDVESLKSALS 104

Query: 397 KSPVKIKNFGIWLRYESRSGVH-NMYREYRDLSVGGAVTQCYRDMGARHRARAH 239
            S  K+++    L     S V      +  DL++G AVT C R M    RA  H
Sbjct: 105 DSNSKLQSVAAPLLSSLDSLVEAQTVSKNVDLAIG-AVTHCVRVMELVSRANQH 157


>At1g26870.1 68414.m03277 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
           similar to GB:AAD22369, NAM stands for No Apicla
           Meristem
          Length = 425

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 18/43 (41%), Positives = 21/43 (48%)
 Frame = -2

Query: 559 KLPSESEPKPPLYQMRIFSPDPIVAKSRFWYFLRQLKKFKKTT 431
           +LPS SEP PP    R F  D  V+ +  W   R  KK   TT
Sbjct: 149 RLPSLSEPSPP--SKRFF--DSPVSPNDSWAICRIFKKTNTTT 187


>At5g08600.1 68418.m01023 U3 ribonucleoprotein (Utp) family protein
           contains Pfam profile: PF04615 Utp14 protein
          Length = 822

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 13/48 (27%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
 Frame = -2

Query: 445 FKKTTGEIVSIKEIPE-KSPVKIKNFGIWLRYESRSGV-HNMYREYRD 308
           F+K   E+++ +E+PE + PV++  +G W   +++ G+   + RE+ +
Sbjct: 665 FEKDKQEVLN-QEVPEPEKPVQVAGWGHWTNNQNKRGLPSRIVREHEE 711


>At5g04700.1 68418.m00478 hypothetical protein
          Length = 669

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 13/97 (13%)
 Frame = -2

Query: 430 GEIVS-IKEIPEKSPVKIKNFGIWLRY-ES-------RSGVHNMYREYRDLSVG---GAV 287
           G+ VS IKE+PE+  V      I + + ES       R    N+Y EY  LS G   G V
Sbjct: 34  GDSVSPIKEVPEEEEVPNDPVNIQIPFIESALSTSRLRGKNTNVYYEYIQLSQGISQGRV 93

Query: 286 TQCYRDMGARHRARAHS-IQIIKVEVIKAAACRRPQV 179
            +  +D    H       I + +  ++KA AC +P++
Sbjct: 94  -EIVKDFLNHHPDSVDEWINLYETPLLKACACGKPEI 129


>At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta
           subunit (GB1) / GTP-binding protein beta subunit (AGB1)
           / transducin contains 7 WD-40 repeats (PF00400);
           identical to Guanine nucleotide-binding protein beta
           subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
           al, PNAS 91:9954 (1994)
          Length = 347

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 159 LLVWNCLTCGRRHAAALITSTLMIC 233
           L+VWN LT  + HA  L  + +M C
Sbjct: 89  LIVWNALTSQKTHAIKLPCAWVMTC 113


>At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta
           subunit (GB1) / GTP-binding protein beta subunit (AGB1)
           / transducin contains 7 WD-40 repeats (PF00400);
           identical to Guanine nucleotide-binding protein beta
           subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
           al, PNAS 91:9954 (1994)
          Length = 315

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 159 LLVWNCLTCGRRHAAALITSTLMIC 233
           L+VWN LT  + HA  L  + +M C
Sbjct: 27  LIVWNALTSQKTHAIKLPCAWVMTC 51


>At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta
           subunit (GB1) / GTP-binding protein beta subunit (AGB1)
           / transducin contains 7 WD-40 repeats (PF00400);
           identical to Guanine nucleotide-binding protein beta
           subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
           al, PNAS 91:9954 (1994)
          Length = 377

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 159 LLVWNCLTCGRRHAAALITSTLMIC 233
           L+VWN LT  + HA  L  + +M C
Sbjct: 89  LIVWNALTSQKTHAIKLPCAWVMTC 113


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,501,448
Number of Sequences: 28952
Number of extensions: 259145
Number of successful extensions: 765
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)