Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_E09
         (582 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein S24|Schizosac...   155   3e-39
SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein S24|Sc...   150   2e-37
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S...    28   1.1  
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom...    27   1.5  
SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase...    27   1.5  
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    27   2.6  
SPAC23H4.10c |thi4||thiamine-phosphate dipyrophosphorylase/hydro...    26   3.5  
SPAC22F8.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   8.1  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    25   8.1  
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    25   8.1  

>SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein
           S24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 134

 Score =  155 bits (377), Expect = 3e-39
 Identities = 79/122 (64%), Positives = 93/122 (76%), Gaps = 1/122 (0%)
 Frame = +3

Query: 45  MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFG 224
           MSE   TIRTRKFMTNRLL RKQMV D+LHPGK  +SK EIREKLA+MYK   + V  FG
Sbjct: 1   MSEAV-TIRTRKFMTNRLLQRKQMVVDILHPGKANLSKNEIREKLAQMYKTDSECVQAFG 59

Query: 225 FKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEK-KRPTRKQRKERKNRMKKVR 401
            +T+FGGG+STGFALIYD+ +  KKFEP +RL R G  E  ++  R+QRK+RKNR KKV 
Sbjct: 60  LRTHFGGGRSTGFALIYDSTESMKKFEPHYRLVRVGQAEPIQKVARQQRKQRKNRGKKVF 119

Query: 402 GT 407
           GT
Sbjct: 120 GT 121


>SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein
           S24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 134

 Score =  150 bits (363), Expect = 2e-37
 Identities = 74/122 (60%), Positives = 91/122 (74%), Gaps = 1/122 (0%)
 Frame = +3

Query: 45  MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFG 224
           MSE   TIRTRKFMTNRLL RKQMV D+LHPGK  +SK ++REKL +MYK     V  FG
Sbjct: 1   MSEAV-TIRTRKFMTNRLLQRKQMVVDILHPGKANISKNDLREKLGQMYKTDASAVQAFG 59

Query: 225 FKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEK-KRPTRKQRKERKNRMKKVR 401
            +T++GGG++TGFALIYD ++  KKFEP +RL R G  E  ++  R+QRK+RKNR KKV 
Sbjct: 60  LRTHYGGGRTTGFALIYDDVEAMKKFEPHYRLVRVGHAEPIQKVARQQRKQRKNRGKKVF 119

Query: 402 GT 407
           GT
Sbjct: 120 GT 121


>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
           Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 624

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 297 KFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 395
           K+ P  R    G + +KR  RK++ E+KN   K
Sbjct: 539 KYRPNARKPLVGRHREKRQLRKEKPEKKNNSTK 571


>SPAC22A12.11 |dak1||dihydroxyacetone kinase
           Dak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 162 EIREKLAKMYKVTPDVVFVFGFKTNFGG 245
           +++E LAK YK+ P  +F   F T+  G
Sbjct: 286 KVKEALAKEYKINPVRIFAGPFTTSLNG 313


>SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 444

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -2

Query: 233 RLETEHENY-VWRHFVHFSELFTDLSFADGRFSWMQDIAYHL 111
           RLE EH    V R+      L    +F D R+ W Q+I+  L
Sbjct: 261 RLEVEHPGEEVLRNNRILGRLMPSRAFGDARYKWSQEISERL 302


>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 337 MKRRGRHANSVRNVRTE*RRYEVPRN 414
           +KRR R  N++R +  E RRY +P++
Sbjct: 28  VKRRKRLFNAIRKLWNERRRYRMPKD 53


>SPAC23H4.10c |thi4||thiamine-phosphate
           dipyrophosphorylase/hydroxyethylthiazole kinase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -1

Query: 405 YLVPSSFCSYVPYAVCVSASSFHTGRDERVCVLAQTSL 292
           Y VP      +  A+ V A   H G+D+  C LA+  L
Sbjct: 65  YDVPFLINDRIDVALAVGADGVHIGQDDMDCALARKIL 102


>SPAC22F8.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 133

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 410 LGTSYLLHSVLTFLTLFACRPLLFIQAVTSESVFWL 303
           L TS+   S+L  L  +   PLLF+ +  S S + L
Sbjct: 17  LNTSFSFSSLLCILCFYKDGPLLFLYSPLSASYYCL 52


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1517

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = -2

Query: 260 SGRFATTEVRLETEHENYVWRHFVHFSELFTDLSFADGRFSWMQDI 123
           +G +A  E      HENY      H  E++ D    + R ++  DI
Sbjct: 60  NGMYAGAENHNVENHENYTMVGHDHMEEVYGDDLVNEPRIAYSSDI 105


>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 319 SLCFGSNFFAKSSVS*IKANPVDLP 245
           S CF +N F+KSS+  I +N   +P
Sbjct: 766 SFCFINNLFSKSSLKAISSNDSIVP 790


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,121,672
Number of Sequences: 5004
Number of extensions: 41443
Number of successful extensions: 131
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)