Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_E09
         (582 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04920.1 68416.m00534 40S ribosomal protein S24 (RPS24A) simi...   170   5e-43
At5g28060.1 68418.m03382 40S ribosomal protein S24 (RPS24B) 40S ...   166   1e-41
At5g07570.1 68418.m00867 glycine/proline-rich protein contains s...    29   1.7  
At2g41790.1 68415.m05165 peptidase M16 family protein / insulina...    29   2.3  
At5g26850.1 68418.m03203 expressed protein                             28   5.2  
At3g52000.1 68416.m05704 serine carboxypeptidase S10 family prot...    27   6.9  
At3g15850.1 68416.m02005 fatty acid desaturase family protein si...    27   6.9  
At1g80030.3 68414.m09368 DNAJ heat shock protein, putative simil...    27   6.9  
At1g80030.2 68414.m09367 DNAJ heat shock protein, putative simil...    27   6.9  
At1g80030.1 68414.m09366 DNAJ heat shock protein, putative simil...    27   6.9  
At3g59020.1 68416.m06578 importin beta-2 subunit family protein ...    27   9.1  
At3g04740.1 68416.m00510 expressed protein (SWP1)                      27   9.1  
At1g62280.1 68414.m07026 C4-dicarboxylate transporter/malic acid...    27   9.1  

>At3g04920.1 68416.m00534 40S ribosomal protein S24 (RPS24A) similar
           to ribosomal protein S19 GB:445612 [Solanum tuberosum]
           and similar to ribosomal protein S24 GB:4506703 [Homo
           sapiens]
          Length = 133

 Score =  170 bits (414), Expect = 5e-43
 Identities = 81/121 (66%), Positives = 99/121 (81%), Gaps = 1/121 (0%)
 Frame = +3

Query: 45  MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVT-PDVVFVF 221
           M+E   TIRTRKFMTNRLL+RKQ V DVLHPG+  VSK E++EKLA+MY+V  P+ +FVF
Sbjct: 1   MAEKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVF 60

Query: 222 GFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVR 401
            F+T+FGGGKS+GF LIYDT++ AKKFEPK+RL R+GL  K   +RKQ KERKNR KK+R
Sbjct: 61  KFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120

Query: 402 G 404
           G
Sbjct: 121 G 121


>At5g28060.1 68418.m03382 40S ribosomal protein S24 (RPS24B) 40S
           ribosomal protein S19, Cyanophora paradoxa,
           EMBL:CPA245654
          Length = 133

 Score =  166 bits (403), Expect = 1e-41
 Identities = 79/121 (65%), Positives = 97/121 (80%), Gaps = 1/121 (0%)
 Frame = +3

Query: 45  MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVT-PDVVFVF 221
           M+E   TIRTR FMTNRLLARKQ V DVLHPG+  VSK E++EKLA+MY+V  P+ +F F
Sbjct: 1   MAEKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCF 60

Query: 222 GFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVR 401
            F+T+FGGGKS+G+ LIYDT++ AKKFEPK+RL R+GL  K   +RKQ KERKNR KK+R
Sbjct: 61  KFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120

Query: 402 G 404
           G
Sbjct: 121 G 121


>At5g07570.1 68418.m00867 glycine/proline-rich protein contains
           similarity to flagelliform silk protein [Nephila
           clavipes] gi|7106224|gb|AAF36090
          Length = 1504

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 204 DVVFVFGFKTNFGGGKSTGFALIYDT 281
           DV FV GF T+F  G   GFA+ + T
Sbjct: 251 DVGFVVGFVTSFAAGLDVGFAIDFAT 276



 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 213 FVFGFKTNFGGGKSTGFALIYDT 281
           FV GF T+F  G  TGF + +DT
Sbjct: 110 FVTGFATDFDVGFDTGFTIGFDT 132


>At2g41790.1 68415.m05165 peptidase M16 family protein / insulinase
           family protein contains Pfam domain, PF05193: Peptidase
           M16 inactive domain; similar to insulin-degrading enzyme
           (Insulysin, Insulinase, Insulin protease) [Mouse]
           SWISS-PROT:Q9JHR7
          Length = 970

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = -2

Query: 263 KSGRFATTEVRLETEHENYVWRHFVHFSELFTDLSFADGRFSWMQ--DIAYHLLA 105
           K  RFA  +  +  E++NY +R   H +  +  L   D  + W +  D+  HL A
Sbjct: 615 KPDRFAVIKETVTKEYQNYKFRQPYHQAMYYCSLILQDQTWPWTEELDVLSHLEA 669


>At5g26850.1 68418.m03203 expressed protein
          Length = 919

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +3

Query: 84  MTNRLLARKQMVCDVLHPGKPTVSKTEIRE-KLAKMYKVTPDVVFVFGFKTN 236
           M +++     ++ D++    P +SK E  + K+  + + TPD  F+FG + N
Sbjct: 702 MRSKVELSNTIITDIVAKNLPKLSKLEEADVKMQILEQFTPDDAFMFGSRPN 753


>At3g52000.1 68416.m05704 serine carboxypeptidase S10 family protein
           similar to SP|P52711 Serine carboxypeptidase II-3
           precursor (EC 3.4.16.6) Hordeum vulgare; contains Pfam
           profile PF0450 serine carboxypeptidase
          Length = 482

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -3

Query: 115 ICLRANNLLVINLRVRIVAVPSLIFDYFRDFGVK 14
           I L  NN  +INLR  ++  PSL  +   DFG K
Sbjct: 222 IILHRNNQTLINLRGILIGNPSLNREIQDDFGYK 255


>At3g15850.1 68416.m02005 fatty acid desaturase family protein
           similar to delta 9 acyl-lipid desaturase (ADS1)
           GI:2970034 from [Arabidopsis thaliana]
          Length = 371

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -2

Query: 422 YFRFLGTSYLLHSVLTFLTLFACRPLLFIQAVTSESVFWL 303
           ++RFL T+Y+LH +   + L+A     FI       + W+
Sbjct: 237 FYRFLRTTYILHPLALAVALYAMGGFPFIVWGMGVRIVWV 276


>At1g80030.3 68414.m09368 DNAJ heat shock protein, putative similar
           to SP|Q05646 Chaperone protein dnaJ {Erysipelothrix
           rhusiopathiae}; contains Pfam profiles PF00226: DnaJ
           domain, PF01556: DnaJ C terminal region, PF00684: DnaJ
           central domain (4 repeats)
          Length = 500

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -2

Query: 266 SKSGRFATTEVRLETEHENYVWRHFVHFSELFTDLSFADGRFSWMQD 126
           S++ +    E   E E ENY+W +   F+      S A+G   W++D
Sbjct: 457 SENKKDEVKEENEEPEQENYLWNNIKEFAG-----SVANGALKWLRD 498


>At1g80030.2 68414.m09367 DNAJ heat shock protein, putative similar
           to SP|Q05646 Chaperone protein dnaJ {Erysipelothrix
           rhusiopathiae}; contains Pfam profiles PF00226: DnaJ
           domain, PF01556: DnaJ C terminal region, PF00684: DnaJ
           central domain (4 repeats)
          Length = 500

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -2

Query: 266 SKSGRFATTEVRLETEHENYVWRHFVHFSELFTDLSFADGRFSWMQD 126
           S++ +    E   E E ENY+W +   F+      S A+G   W++D
Sbjct: 457 SENKKDEVKEENEEPEQENYLWNNIKEFAG-----SVANGALKWLRD 498


>At1g80030.1 68414.m09366 DNAJ heat shock protein, putative similar
           to SP|Q05646 Chaperone protein dnaJ {Erysipelothrix
           rhusiopathiae}; contains Pfam profiles PF00226: DnaJ
           domain, PF01556: DnaJ C terminal region, PF00684: DnaJ
           central domain (4 repeats)
          Length = 500

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -2

Query: 266 SKSGRFATTEVRLETEHENYVWRHFVHFSELFTDLSFADGRFSWMQD 126
           S++ +    E   E E ENY+W +   F+      S A+G   W++D
Sbjct: 457 SENKKDEVKEENEEPEQENYLWNNIKEFAG-----SVANGALKWLRD 498


>At3g59020.1 68416.m06578 importin beta-2 subunit family protein
           similar to D-Importin 7/RanBP7 [Drosophila melanogaster]
           GI:7542336; contains Pfam profile PF03810: Importin-beta
           N-terminal domain
          Length = 1112

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 348 SSFHTGRDERVCVLAQTSLLSLACRRL 268
           S+F    D++VC+L  TSL SL   +L
Sbjct: 916 SNFKREHDKKVCILGLTSLFSLPAGQL 942


>At3g04740.1 68416.m00510 expressed protein (SWP1)
          Length = 1703

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -3

Query: 163 SVLLTVGFPGCKTSHTICL 107
           S +LT+GFP C++SH + +
Sbjct: 522 SSILTLGFPDCESSHLLLM 540


>At1g62280.1 68414.m07026 C4-dicarboxylate transporter/malic acid
           transport family protein contains Pfam profile PF03595:
           C4-dicarboxylate transporter/malic acid transport
           protein
          Length = 385

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/64 (21%), Positives = 34/64 (53%)
 Frame = -2

Query: 422 YFRFLGTSYLLHSVLTFLTLFACRPLLFIQAVTSESVFWLKLLC*V*RVVD*SKSGRFAT 243
           +  ++G +YL    +++L +    P++   +V  +++FW+  +  +   +D    G++ T
Sbjct: 115 FLHYIGVNYLYAPSISWLLMLQSAPMMEPNSVLYQTLFWIFAVPVL--TLDIKLYGQWFT 172

Query: 242 TEVR 231
           TE R
Sbjct: 173 TEKR 176


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,018,662
Number of Sequences: 28952
Number of extensions: 213164
Number of successful extensions: 659
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1141585696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)