Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_E08
         (495 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73426-1|CAA97792.1|  155|Caenorhabditis elegans Hypothetical pr...   204   4e-53
AL031629-5|CAA20979.1|   99|Caenorhabditis elegans Hypothetical ...    29   1.9  
Z81528-4|CAB04281.1|  575|Caenorhabditis elegans Hypothetical pr...    28   4.3  
Z98853-4|CAB57905.1|  301|Caenorhabditis elegans Hypothetical pr...    27   5.7  
U42830-2|AAC48274.1|  243|Caenorhabditis elegans Hypothetical pr...    27   7.5  

>Z73426-1|CAA97792.1|  155|Caenorhabditis elegans Hypothetical
           protein F40F11.1 protein.
          Length = 155

 Score =  204 bits (497), Expect = 4e-53
 Identities = 96/141 (68%), Positives = 112/141 (79%), Gaps = 3/141 (2%)
 Frame = +1

Query: 1   ADQTEKAFQKQATVFLNRKGGM---KRKDMRHSKNVGLGFKTPREAVEGTYIDKKCPFTG 171
           ++QTE+AF KQ TV LN K  +    +K  R+ + VGLGFK PR+AVEGTYIDKKCP+ G
Sbjct: 2   SEQTERAFLKQPTVNLNNKARILAGSKKTPRYIREVGLGFKAPRDAVEGTYIDKKCPWAG 61

Query: 172 NVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGD 351
           NV IRG ILTGVV K KM RTIV+RRDYLHY+ KY R+EKRH+N+  H SP FRD+  GD
Sbjct: 62  NVPIRGMILTGVVLKNKMTRTIVVRRDYLHYIKKYRRYEKRHKNVPAHCSPAFRDIHPGD 121

Query: 352 IVTIGECRPLSKTVRFNVLKV 414
           +VTIGECRPLSKTVRFNVLKV
Sbjct: 122 LVTIGECRPLSKTVRFNVLKV 142


>AL031629-5|CAA20979.1|   99|Caenorhabditis elegans Hypothetical
           protein Y106G6D.6 protein.
          Length = 99

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 209 FRK*KCSEQLLSGAIISITCLNTTDL 286
           F   KC EQ +SG +++  C NT DL
Sbjct: 45  FHANKCFEQNVSGQLLTFCCCNTDDL 70


>Z81528-4|CAB04281.1|  575|Caenorhabditis elegans Hypothetical
           protein F35E2.5 protein.
          Length = 575

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -2

Query: 251 SRLITIVRCIFIF*TTPVRIRPRMDTLPVNGHFLSMYVPSTASRGVLK 108
           ++ +T  +   +  TTPV++ P   TLP     L++   +TA+R   K
Sbjct: 341 TKRLTTTKATTVLTTTPVKVTPATTTLPTTS--LALETTTTATRTTAK 386


>Z98853-4|CAB57905.1|  301|Caenorhabditis elegans Hypothetical
           protein R08A2.4 protein.
          Length = 301

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -1

Query: 303 VPVSLLKSVVFRQVMEIIAPDNNCSLHFHFLNNACQD 193
           + +SLL+ +   QV+  I P+   +L+FH  +  C D
Sbjct: 148 IDISLLEYLQAVQVLTYIHPETLKTLNFHIYSEKCND 184


>U42830-2|AAC48274.1|  243|Caenorhabditis elegans Hypothetical
           protein C53B7.3 protein.
          Length = 243

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 243 DNNCSLHFHFLNNACQDTASD 181
           DN C L+   +NN CQ T S+
Sbjct: 169 DNTCGLNQRCVNNMCQSTGSN 189


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,988,824
Number of Sequences: 27780
Number of extensions: 243140
Number of successful extensions: 624
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)