Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_E08
         (495 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B) ribo...   199   1e-51
At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A)           194   4e-50
At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C)           190   4e-49
At1g49400.1 68414.m05537 ribosomal protein S17 family protein si...    39   0.002
At3g18880.1 68416.m02398 ribosomal protein S17 family protein si...    37   0.009
At1g79850.1 68414.m09328 30S ribosomal protein S17, chloroplast ...    31   0.32 
At4g12390.1 68417.m01958 invertase/pectin methylesterase inhibit...    27   5.3  
At4g26980.1 68417.m03882 expressed protein                             27   6.9  
At4g35720.1 68417.m05069 expressed protein contains Pfam profile...    27   9.2  

>At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B)
           ribosomal protein S11, Arabidopsis thaliana,PIR2:C35542
          Length = 159

 Score =  199 bits (485), Expect = 1e-51
 Identities = 97/143 (67%), Positives = 112/143 (78%), Gaps = 5/143 (3%)
 Frame = +1

Query: 1   ADQTEKAFQKQATVFLNRKGGMKRK-----DMRHSKNVGLGFKTPREAVEGTYIDKKCPF 165
           A+QTEKAF KQ  VFL+ K   K K       R  KN+GLGFKTPREA+EGTYID+KCPF
Sbjct: 2   AEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIEGTYIDQKCPF 61

Query: 166 TGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEI 345
           TG VSIRGRIL+G     KMQRTI++RRDYLH++ KY R+EKRH N+  H+SPCFR V+ 
Sbjct: 62  TGTVSIRGRILSGTCHSAKMQRTIIVRRDYLHFVKKYRRYEKRHSNIPAHVSPCFR-VKE 120

Query: 346 GDIVTIGECRPLSKTVRFNVLKV 414
           GD VTIG+CRPLSKTVRFNVLKV
Sbjct: 121 GDRVTIGQCRPLSKTVRFNVLKV 143


>At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A)
          Length = 160

 Score =  194 bits (472), Expect = 4e-50
 Identities = 93/143 (65%), Positives = 109/143 (76%), Gaps = 5/143 (3%)
 Frame = +1

Query: 1   ADQTEKAFQKQATVFLNRKGGMKRK-----DMRHSKNVGLGFKTPREAVEGTYIDKKCPF 165
           A+QTEKAF KQ  VFL+ K   K K       R  KN+GLGFKTPREA++G Y+DKKCPF
Sbjct: 2   AEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYVDKKCPF 61

Query: 166 TGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEI 345
           TG VSIRGRIL G     KMQRTI++RRDYLH++ KY R+EKRH N+  H+SPCFR V+ 
Sbjct: 62  TGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFR-VKE 120

Query: 346 GDIVTIGECRPLSKTVRFNVLKV 414
           GD + IG+CRPLSKTVRFNVLKV
Sbjct: 121 GDHIIIGQCRPLSKTVRFNVLKV 143


>At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C)
          Length = 159

 Score =  190 bits (463), Expect = 4e-49
 Identities = 94/143 (65%), Positives = 109/143 (76%), Gaps = 5/143 (3%)
 Frame = +1

Query: 1   ADQTEKAFQKQATVFLNRK--GGMKRKDM---RHSKNVGLGFKTPREAVEGTYIDKKCPF 165
           A+QTEKAF KQ  VFL+ K  G  KR      R  KN+GLGFKTPREA++G YID KCPF
Sbjct: 2   AEQTEKAFLKQPKVFLSSKISGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYIDSKCPF 61

Query: 166 TGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEI 345
           TG VSIRGRIL G     KMQRTI++RR+YLH++ KY R+EKRH N+  H+SPCFR V+ 
Sbjct: 62  TGTVSIRGRILAGTCHSAKMQRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFR-VKE 120

Query: 346 GDIVTIGECRPLSKTVRFNVLKV 414
           GD V IG+CRPLSKTVRFNVLKV
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKV 143


>At1g49400.1 68414.m05537 ribosomal protein S17 family protein
           similar to 40S ribosomal protein S17 GI:1620985 from
           [Nicotiana plumbaginifolia]
          Length = 116

 Score = 38.7 bits (86), Expect = 0.002
 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
 Frame = +1

Query: 202 GVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV-EIGDIVTIGECRP 378
           G V   KMQ+++V+  D L +   YNR+ KR      H     +D   IGD V +   RP
Sbjct: 6   GTVVSNKMQKSVVVAVDRLFHNKIYNRYVKRTSKFMAHDD---KDACNIGDRVKLDPSRP 62

Query: 379 LSKTVRFNVLKV 414
           LSK   + V ++
Sbjct: 63  LSKNKHWIVAEI 74


>At3g18880.1 68416.m02398 ribosomal protein S17 family protein
           similar to 40S ribosomal protein S17 GB:Y08858 from
           [Nicotiana plumbaginifolia]
          Length = 105

 Score = 36.7 bits (81), Expect = 0.009
 Identities = 23/66 (34%), Positives = 31/66 (46%)
 Frame = +1

Query: 190 RILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGE 369
           + + G V   KMQ ++V+  D L +   YNR+ KR      H         IGD V +  
Sbjct: 2   KAVIGTVVSNKMQMSVVVAVDRLFHNNIYNRYVKRTSKFMAHDEK--DSCNIGDRVKLDP 59

Query: 370 CRPLSK 387
            RPLSK
Sbjct: 60  SRPLSK 65


>At1g79850.1 68414.m09328 30S ribosomal protein S17, chloroplast /
           CS17 (RPS17) identical to 30S ribosomal protein S17,
           chloroplast precursor GB:P16180 [Arabidopsis thaliana]
          Length = 149

 Score = 31.5 bits (68), Expect = 0.32
 Identities = 21/75 (28%), Positives = 34/75 (45%)
 Frame = +1

Query: 190 RILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGE 369
           + + G V      +T+ +    L   PKY R  +  +    H  P     ++GD+V + +
Sbjct: 51  KTMQGRVVCATSDKTVAVEVVRLAPHPKYKRRVRMKKKYQAH-DPD-NQFKVGDVVRLEK 108

Query: 370 CRPLSKTVRFNVLKV 414
            RP+SKT  F  L V
Sbjct: 109 SRPISKTKSFVALPV 123


>At4g12390.1 68417.m01958 invertase/pectin methylesterase inhibitor
           family protein low similarity to pectinesterase from
           Arabidopsis thaliana SP|Q42534, Lycopersicon esculentum
           SP|Q43143; contains Pfam profile PF04043: Plant
           invertase/pectin methylesterase inhibitor
          Length = 206

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +1

Query: 187 GRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRN 303
           G+++ GVV+    +R + + R   + L   NRF  RH++
Sbjct: 168 GKVMDGVVKSAIRRRVVHVARVTSNALALVNRFAARHKS 206


>At4g26980.1 68417.m03882 expressed protein 
          Length = 343

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +1

Query: 112 KTPREAVEGTYIDKKCPFTGNVSIRGRILTGVVQK 216
           + PREA+    +D+  PF  ++  +  ++TGVVQK
Sbjct: 242 EVPREALPDVALDE--PFVKDIDPKTWVVTGVVQK 274


>At4g35720.1 68417.m05069 expressed protein contains Pfam profile
           PF03087: Arabidopsis protein of unknown function
          Length = 325

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +1

Query: 43  FLNRKGGMKRKDMRHSKNVGLGFKTPREAVEGTYIDKKCPFTG 171
           FL+   G+K K+  H K  G+  K  ++ +E  + +K+   TG
Sbjct: 203 FLSSPKGLKTKNHHHHKGWGIVMKLVKKGIEHHHQEKRDYETG 245


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,298,654
Number of Sequences: 28952
Number of extensions: 222759
Number of successful extensions: 558
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 868578304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)