Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_E07
         (596 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity...    28   1.2  
SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces po...    27   2.7  
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    26   3.6  
SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2 |Schizosacc...    25   6.3  
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    25   6.3  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    25   8.4  

>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ctf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
 Frame = +2

Query: 194 LLGIKSSIGTSFNLFPKLARDILDAIENNDIAKARALQEKLSL-AIEAHTAEGAWVPIMK 370
           LL + S + T  ++ P+ AR +L A   N      A Q  L +  ++A+  +   V +  
Sbjct: 230 LLNMLSKLQTVVHIAPEEARRLLIA---NPALPYAAFQAMLLMNLVDANVLQQVVVAVKN 286

Query: 371 AGMEIATGIKVGPPSLPQRPISAEAKQR 454
             M         PPS+PQ+  S+  K +
Sbjct: 287 KNMHQPASATSSPPSVPQKIPSSNHKSQ 314


>SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 261

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -3

Query: 345 SAVCASMAKLSFSCKALALAMSLFSIASSIS 253
           +A CAS A +   CKALA+  + F+  +S+S
Sbjct: 170 AAYCASKAAVRQLCKALAVEWAEFARINSVS 200


>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 37/114 (32%), Positives = 49/114 (42%), Gaps = 5/114 (4%)
 Frame = -3

Query: 411 GGPTLIPVAISIPAF---IIGTHAPSAVCASMAKLSFSCKALALAMSLFSIASSISRASL 241
           GGP   P + + P F   I G   P     S    S S  +     SL+  ASS    +L
Sbjct: 478 GGPQTFPNSGNNPNFNRGIAGIVPPGWRLVSSNTQSLSTNSAMT--SLYQNASSADN-NL 534

Query: 240 GNRL-NEVPILDFMPRSAAGANSV-SAPRNISWPSLRERKTWAPSLRSFEVNLR 85
           G+ L N VP+   + +S   +N+  +A  NIS   LRE  T    LR    N R
Sbjct: 535 GSSLPNVVPLSRGLTQSNETSNTFPAASSNIS-SQLRELHTKIDELRETVSNFR 587


>SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 479

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = -1

Query: 476 NFSTSFGFAASLLRISVSAAAMVAQL*YQLLSPYRLSL*APMRLLQ 339
           +FS   G  A LL+      +++  L  ++  PY++S+   +RLL+
Sbjct: 119 HFSVHAGMGAGLLKNQDRLVSILDALVNEIGKPYKISISCKIRLLE 164


>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -2

Query: 397 NTSCYLHTGFHYRHPCAFCSVCFN 326
           NT CY     + R P   CSVC N
Sbjct: 40  NTYCYCGKDRNLRFPDLQCSVCLN 63


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 23/72 (31%), Positives = 33/72 (45%)
 Frame = +2

Query: 188 AALLGIKSSIGTSFNLFPKLARDILDAIENNDIAKARALQEKLSLAIEAHTAEGAWVPIM 367
           AAL+ + S+  T   +F ++   I  A E   +A A  L E +  AIE      A  P  
Sbjct: 783 AALIYVFST-ATEDTVFYRVVNGIQQATE---VAAAYELNEPVDYAIERFCQFTALDPSS 838

Query: 368 KAGMEIATGIKV 403
             G ++ T IKV
Sbjct: 839 VPGTQLNTAIKV 850


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,546,972
Number of Sequences: 5004
Number of extensions: 51069
Number of successful extensions: 152
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)