Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_E06
         (519 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    27   1.7  
SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein Pvg5|Schizos...    27   2.2  
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    27   2.2  
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p...    26   2.9  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   5.1  
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ...    25   5.1  
SPBP35G2.02 |||DUF1000 family protein|Schizosaccharomyces pombe|...    25   6.8  

>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 155 YQSDQSLPSYGFGSSVIHPLHML 87
           ++ D S PSY  GS + H +H L
Sbjct: 219 FRPDVSFPSYFLGSLIAHEIHFL 241


>SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein
           Pvg5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = -2

Query: 140 SLPSYGFGSSVIHPLH---MLEATKHSFLSHLYHYIPYNITVF 21
           SLP++  GS + +PL+   +  AT   F  HL++++  ++  F
Sbjct: 122 SLPTFNNGSDLFNPLYFAVLNAATPARFTFHLFNHVMDSVVPF 164


>SPCC306.04c |set1||histone lysine methyltransferase
            Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
 Frame = +3

Query: 183  DQIEDILKKGQLKRTHNHK*YNLGCIKAVMKIKNLKRCVAI----IASGKDIVSVYPYGR 350
            D I D  KKG + R  NH      CI  +++++  ++ V      I  G+++   Y +  
Sbjct: 843  DVIVDATKKGNIARFINHS-CAPNCIARIIRVEGKRKIVIYADRDIMHGEELTYDYKFPE 901

Query: 351  EV*CNELKC*LCEGP 395
            E   +++ C LC  P
Sbjct: 902  E--ADKIPC-LCGAP 913


>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 723

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
 Frame = +3

Query: 222 RTHNHK*YNLGCIKAVMKIKNLKRC----VAIIASGKDIVS 332
           R+ NHK  N+G I   MK K LK C      +I  G D++S
Sbjct: 470 RSGNHKHANVGLIIPKMKQKVLKGCRLLFSGVIPLGVDVLS 510


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +3

Query: 69   GMLSCFEHVERMDDRRSKSIRWQ*LVTLVRVKLGEQILDQ 188
            G +SC E V    +  ++S+ W  ++ LV      QI DQ
Sbjct: 1048 GSMSCVEFVAEARETINRSLEWLIVLDLVNYADSLQIKDQ 1087


>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 797

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 103 WMTEDPNP*DGSDWSLW 153
           W+TE PN  + S+W  W
Sbjct: 625 WLTEAPNFDEASEWYTW 641


>SPBP35G2.02 |||DUF1000 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 207

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 334 TETMSFPLAMIATHLFRF 281
           TET  FPL    +H+F F
Sbjct: 118 TETFEFPLTFEGSHIFEF 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,153,295
Number of Sequences: 5004
Number of extensions: 42254
Number of successful extensions: 97
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)