Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_E06
         (519 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42429| Best HMM Match : FAD_binding_8 (HMM E-Value=8.8e-06)         29   1.7  
SB_27730| Best HMM Match : DUF755 (HMM E-Value=3.9)                    28   5.3  
SB_53092| Best HMM Match : TT_ORF2 (HMM E-Value=3.4)                   28   5.3  

>SB_42429| Best HMM Match : FAD_binding_8 (HMM E-Value=8.8e-06)
          Length = 359

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 257 YQSGHENKKPKEVCRNHSKWKGHSLCL 337
           YQS  +   P E+C NH+ W  H  C+
Sbjct: 67  YQSNVDKHDP-EICMNHTLWYNHPKCM 92


>SB_27730| Best HMM Match : DUF755 (HMM E-Value=3.9)
          Length = 262

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
 Frame = -3

Query: 202 RISSIWSKICSPSLTLT-KVTSHCHXXXXXXXXXXXSTCSKQLSIPFSLIYITTFPTTSQ 26
           R  + WS+ C+ S   +   TS C                K +S  F ++Y+   PT ++
Sbjct: 37  RAKNDWSQTCAFSSHFSFDFTSSCEVLGTTFYAFVMLVFLKNIS-DFGVLYVVCLPTKAR 95

Query: 25  CSHYPYF 5
               PY+
Sbjct: 96  LHRLPYY 102


>SB_53092| Best HMM Match : TT_ORF2 (HMM E-Value=3.4)
          Length = 598

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 437 TTILHLCFYTFDKKRTFTQSTL 372
           TT+LH  F  F+KK  F QS L
Sbjct: 359 TTVLHFGFEVFEKKTAFDQSGL 380


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,841,659
Number of Sequences: 59808
Number of extensions: 302782
Number of successful extensions: 674
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)