Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_E06
         (519 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U14635-12|AAC46655.1|  159|Caenorhabditis elegans Phosphodiester...    35   0.030
Z81540-8|CAB04407.2|  326|Caenorhabditis elegans Hypothetical pr...    30   1.1  
U80952-4|AAB38095.1|  662|Caenorhabditis elegans Hypothetical pr...    27   6.1  

>U14635-12|AAC46655.1|  159|Caenorhabditis elegans Phosphodiesterase
           delta-like protein1 protein.
          Length = 159

 Score = 35.1 bits (77), Expect = 0.030
 Identities = 13/23 (56%), Positives = 18/23 (78%)
 Frame = +2

Query: 449 LFQKVLFKGRCLEEWFFEFGYVI 517
           L Q+V  KG  +EEW+F+FG+VI
Sbjct: 85  LEQRVYLKGTIIEEWYFDFGFVI 107


>Z81540-8|CAB04407.2|  326|Caenorhabditis elegans Hypothetical
           protein F46B3.11 protein.
          Length = 326

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
 Frame = -3

Query: 292 LFRFFIFMTALIHP--RLYYLWL*VLF-SWPFFRISSIWSKICSPSLTLTKVTSHC 134
           L  F +F+T   H   + Y++ L VL  +W  F + +I++++C+  ++L  +   C
Sbjct: 72  LICFIVFLTVFNHTTSKYYFIQLPVLLITWLSFSVLTIFTQVCNFFVSLVAIYKFC 127


>U80952-4|AAB38095.1|  662|Caenorhabditis elegans Hypothetical
           protein F54H5.5 protein.
          Length = 662

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -3

Query: 472 FEQNFLK*MRLKPLSYICVSIHLIKKGPSHNQHFSSLHYTSL 347
           F+ NF     +KP+SY+C+S     +G S N     +H TSL
Sbjct: 520 FDGNFTSLPSMKPVSYLCLSASAKIQGIS-NTITIIIHITSL 560


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,887,082
Number of Sequences: 27780
Number of extensions: 233720
Number of successful extensions: 527
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)