Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_E06
         (519 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g32295.1 68415.m03948 EXS family protein / ERD1/XPR1/SYG1 fam...    31   0.61 
At1g58230.1 68414.m06618 WD-40 repeat family protein / beige-rel...    28   3.3  
At2g31030.1 68415.m03783 oxysterol-binding family protein simila...    28   4.3  
At2g31020.1 68415.m03782 oxysterol-binding family protein simila...    28   4.3  
At2g14210.1 68415.m01583 MADS-box protein (ANR1) identical to AN...    28   4.3  
At4g26380.1 68417.m03795 DC1 domain-containing protein contains ...    27   5.7  
At4g08180.3 68417.m01353 oxysterol-binding family protein simila...    27   5.7  
At4g08180.2 68417.m01352 oxysterol-binding family protein simila...    27   5.7  
At4g08180.1 68417.m01351 oxysterol-binding family protein simila...    27   5.7  

>At2g32295.1 68415.m03948 EXS family protein / ERD1/XPR1/SYG1 family
           protein low similarity to xenotropic and polytropic
           murine leukemia virus receptor [Mustela vison]
           GI:6093316; contains Pfam profile PF03124: EXS family
          Length = 424

 Score = 30.7 bits (66), Expect = 0.61
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 220 FSWPFFRISSIWSKICSPSLT 158
           F W FFRI ++W KI +P  T
Sbjct: 375 FQWAFFRIENVWYKINNPKHT 395


>At1g58230.1 68414.m06618 WD-40 repeat family protein /
           beige-related contains Pfam PF00400: WD domain, G-beta
           repeat; similar to Lipopolysaccharide-responsive and
           beige-like anchor protein (CDC4-like protein)
           (Beige-like protein) (SP:P50851) [Homo sapiens}
          Length = 1280

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +2

Query: 260 QSGHENKKPKEVCRNHSKWK 319
           +SG++NKKP +  + H +WK
Sbjct: 521 ESGNKNKKPLKKVKRHRRWK 540


>At2g31030.1 68415.m03783 oxysterol-binding family protein similar
           to SWH1 [Saccharomyces cerevisiae] GI:402658; contains
           Pfam profile PF01237: Oxysterol-binding protein
          Length = 489

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 130 DGSDWSLW*GSN*VNKFWTR 189
           DG+ W  W  SN  +KFW R
Sbjct: 242 DGTGWKFWGDSNLKSKFWGR 261


>At2g31020.1 68415.m03782 oxysterol-binding family protein similar
           to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
           contains Pfam profiles PF00169: PH domain, PF01237:
           Oxysterol-binding protein
          Length = 760

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 130 DGSDWSLW*GSN*VNKFWTR 189
           DG+ W  W  SN  +KFW R
Sbjct: 509 DGTGWKFWGDSNLKSKFWGR 528


>At2g14210.1 68415.m01583 MADS-box protein (ANR1) identical to ANR1,
           MADS-box protein [Arabidopsis thaliana] GI:2959320
          Length = 234

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 14/46 (30%), Positives = 29/46 (63%)
 Frame = +3

Query: 153 VRVKLGEQILDQIEDILKKGQLKRTHNHK*YNLGCIKAVMKIKNLK 290
           VR+K  + + ++I ++ +KGQ+ +  NH+  N   I  +M+ +N+K
Sbjct: 138 VRLKKDQLMTNEIRELNRKGQIIQKENHELQN---IVDIMRKENIK 180


>At4g26380.1 68417.m03795 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 1016

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 278 KKPKEVCRNHSKWKGHSLCL 337
           KKP  + RNH +W  H+L L
Sbjct: 593 KKPAVLYRNHPRWHEHTLAL 612


>At4g08180.3 68417.m01353 oxysterol-binding family protein similar
           to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
           contains Pfam profiles PF00169: PH domain, PF01237:
           Oxysterol-binding protein
          Length = 813

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 130 DGSDWSLW*GSN*VNKFWTR 189
           DG+ W  W  SN  +KFW R
Sbjct: 552 DGTGWKFWGDSNLRSKFWGR 571


>At4g08180.2 68417.m01352 oxysterol-binding family protein similar
           to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
           contains Pfam profiles PF00169: PH domain, PF01237:
           Oxysterol-binding protein
          Length = 813

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 130 DGSDWSLW*GSN*VNKFWTR 189
           DG+ W  W  SN  +KFW R
Sbjct: 552 DGTGWKFWGDSNLRSKFWGR 571


>At4g08180.1 68417.m01351 oxysterol-binding family protein similar
           to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
           contains Pfam profiles PF00169: PH domain, PF01237:
           Oxysterol-binding protein
          Length = 814

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 130 DGSDWSLW*GSN*VNKFWTR 189
           DG+ W  W  SN  +KFW R
Sbjct: 553 DGTGWKFWGDSNLRSKFWGR 572


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,178,033
Number of Sequences: 28952
Number of extensions: 219326
Number of successful extensions: 457
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 947539968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)