Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_E05
         (649 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0259 + 16274430-16274747,16275180-16275242,16275329-162754...    29   4.2  
11_04_0315 + 16306053-16306753,16306779-16308479,16308894-16309257     28   5.6  
02_05_0008 + 24934917-24935229,24936387-24936608,24936876-249375...    28   7.4  
12_02_1069 + 25801309-25801433,25802429-25802620,25803130-258031...    27   9.7  

>10_08_0259 + 16274430-16274747,16275180-16275242,16275329-16275424,
            16275526-16275618,16276415-16276605,16276684-16276921,
            16277805-16277900,16278324-16278404,16278532-16278939,
            16279048-16279331,16279460-16279547,16279630-16279830,
            16280032-16280118,16280119-16280238,16280536-16280708,
            16281914-16282055,16282292-16282414,16282601-16282656,
            16282735-16283038,16283154-16283283,16283491-16283549,
            16283829-16284061,16285480-16285527,16285765-16285843,
            16285925-16286169,16286338-16286722
          Length = 1446

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/43 (27%), Positives = 26/43 (60%)
 Frame = +3

Query: 297  LIMDIVKEEEQYVYYANYSNTFLYNNEEQRLTYLTEDIGFNSY 425
            L+++++ +  +++   +   T L  NEE+RLT   +D+ + SY
Sbjct: 1309 LMVNLLHDHSRWIASYHEHETLLQENEEERLTKEEQDMAWLSY 1351


>11_04_0315 + 16306053-16306753,16306779-16308479,16308894-16309257
          Length = 921

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 62  YAKDFETFYKSAAFARVHLNEGQFLYAYYIAV 157
           Y KD   FY  +   +  + EG+FL ++Y+ +
Sbjct: 697 YVKDSRLFYSFSESTKELVQEGEFLQSFYVQI 728


>02_05_0008 +
           24934917-24935229,24936387-24936608,24936876-24937591,
           24937646-24937728,24938448-24938514,24938833-24939228,
           24939276-24939318,24939380-24939474,24940287-24940314,
           24940636-24940754
          Length = 693

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = +3

Query: 378 EQRLTYLTEDIGFNSYYYYFHSHLPFWWSSERYGNLKH 491
           E+ + +    IG   Y  Y   + PF       GNLKH
Sbjct: 281 EESIHFFMRSIGLREYSRYLCFNFPFTHEKSLLGNLKH 318


>12_02_1069 +
           25801309-25801433,25802429-25802620,25803130-25803159,
           25803426-25803500,25803599-25804373,25804549-25804614,
           25804746-25804811,25804898-25805140,25805407-25805502
          Length = 555

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 87  TRVPLSL-VCT*MRDSSCTHIILQLSSAMILMDSFYQLLMK 206
           T+ P S  V T +  S+CTH   QLSSA +L     +  +K
Sbjct: 65  TQCPCSFAVATSISSSTCTHFTPQLSSAHLLSSQLKEKELK 105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,464,392
Number of Sequences: 37544
Number of extensions: 318275
Number of successful extensions: 655
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)