Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_E03
(620 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0232 + 2456449-2456652,2456814-2456897,2459113-2459201,245... 30 1.3
10_08_0989 + 22069244-22071679 28 5.2
06_01_0469 + 3322886-3323564,3324033-3324953,3325025-3325155,332... 28 6.9
11_01_0455 + 3517281-3519798,3519888-3520261 27 9.1
10_08_0355 - 17131178-17131268,17131376-17131429,17131521-171316... 27 9.1
07_03_1774 + 29425486-29425831,29426018-29426235,29426337-294271... 27 9.1
03_02_0552 + 9416362-9417790,9417827-9417936,9418032-9418484 27 9.1
01_01_0050 - 382451-382864,382950-383020,383131-383176,383302-38... 27 9.1
>10_01_0232 +
2456449-2456652,2456814-2456897,2459113-2459201,
2459245-2459452,2459764-2459883,2460004-2460087,
2460171-2460242,2460342-2460455,2460852-2460952,
2461024-2461117,2461265-2461432,2461539-2461616,
2461908-2461973,2462052-2462108,2462353-2462572,
2462867-2463003,2465379-2465450,2465530-2465577,
2465681-2465806,2465982-2466047,2466508-2466620,
2467348-2467432,2467885-2467980,2468067-2468114,
2468190-2468258,2468393-2468581
Length = 935
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Frame = +2
Query: 317 LQRIINDLMKLSLAMCSVQHLNHSTSTPSCPVRLTFTKPDFENL-HSIRYITRNG--GSL 487
L+ +ND + +L +V NH T + + F N+ I Y+ ++G +L
Sbjct: 273 LKERVNDFVAAALKQANVTRTNHIMWTMGDDFNYQYAESWFRNMDRLINYVNKDGRVHAL 332
Query: 488 YGHPRLYPEA 517
Y P +Y +A
Sbjct: 333 YSTPSIYTDA 342
>10_08_0989 + 22069244-22071679
Length = 811
Score = 28.3 bits (60), Expect = 5.2
Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 5/119 (4%)
Frame = +2
Query: 212 GKFESYGKKIDFHDEKAINFVGNYWQRTPICMKKKLQRIINDLMKLSLAMCSVQHLNHST 391
G FES+ H + + Y +C++K+ Q I+N + ++LA +Q L
Sbjct: 524 GAFESFDFVFSAH---LMLVILGYTNELCLCLQKRDQDIVNAMSLVTLAKERMQKLR--- 577
Query: 392 STPSCPVRLTFTKPDFENLHSIRYITRNGGSL-YGH-PRLYPEALS---FKRNFHFVGV 553
+ T F N HSI+ T +G + +G PR YP+ + F+R ++GV
Sbjct: 578 -SEGWEEFFQGTVVSFCNKHSIQVPTLDGKYVPHGRSPRFYPDQTNDDHFRREV-YIGV 634
>06_01_0469 +
3322886-3323564,3324033-3324953,3325025-3325155,
3325237-3325317,3328173-3328820
Length = 819
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -1
Query: 167 TVLLRSSLRCVDCSCPAFERMG 102
TVLL +S + C C FERMG
Sbjct: 388 TVLLDTSTMEISCGCRKFERMG 409
>11_01_0455 + 3517281-3519798,3519888-3520261
Length = 963
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 365 SVQHLNHSTSTPSCPVRLTFTKPDFENLHSIRYITRNGGSLYG 493
S+ HLNH + L PDF N S++ + NG +L G
Sbjct: 66 SLGHLNHLQTLWLSNNTLQGVIPDFTNCSSMKALRLNGNNLVG 108
>10_08_0355 -
17131178-17131268,17131376-17131429,17131521-17131663,
17131812-17132096,17132168-17132301,17132383-17132556,
17132639-17132707,17132814-17132878,17133441-17133589,
17133747-17133989,17134119-17134255,17134340-17134561,
17134661-17134827,17136680-17136819
Length = 690
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = +2
Query: 125 NYNLHSV---KNYEAIRFLDIFEKTFVQSLQK 211
NYN+ V KN+ A+R DIF KT + +K
Sbjct: 521 NYNIAIVSLKKNFNAVRLEDIFSKTVQEPSEK 552
>07_03_1774 +
29425486-29425831,29426018-29426235,29426337-29427131,
29427206-29428074,29428317-29428749,29429263-29429859
Length = 1085
Score = 27.5 bits (58), Expect = 9.1
Identities = 20/67 (29%), Positives = 29/67 (43%)
Frame = -3
Query: 432 GLVKVKRTGHEGVLVEWFRCCTEHMASDNFIRSLIILCNFFFIQIGVLCQ*FPTKLIAFS 253
G ++R VLV + S + +L +LC FF QI C TK +A +
Sbjct: 64 GRETMRRLFASHVLVSGLNGLGAEIGSSFYPLTLFVLC-FFLFQIAFNCLLITTKNLALA 122
Query: 252 SWKSIFL 232
KS+ L
Sbjct: 123 GVKSVTL 129
>03_02_0552 + 9416362-9417790,9417827-9417936,9418032-9418484
Length = 663
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 230 GKKIDFHDEKAINFVGNYWQRTPICMKKKLQRIIN 334
G I F +E NF G+Y+ +T +++ LQ N
Sbjct: 489 GSGIGFKEEDKPNFTGSYYSKTKAMVEELLQEYDN 523
>01_01_0050 -
382451-382864,382950-383020,383131-383176,383302-383333,
383409-383558,383666-383849,383934-384109,384580-384628,
384724-384923,385515-385548
Length = 451
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -2
Query: 502 PWMPVKGTPIPGNIPDRMQVLEVR 431
P+MPV G P PG P R V + R
Sbjct: 294 PFMPVPGEPSPGAFPARSYVEQQR 317
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,696,969
Number of Sequences: 37544
Number of extensions: 355244
Number of successful extensions: 896
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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