Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_E03
(620 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 31 0.50
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 31 0.50
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 31 0.50
Z81085-3|CAB03115.1| 769|Caenorhabditis elegans Hypothetical pr... 30 1.2
AF273836-1|AAG15184.1| 362|Caenorhabditis elegans nuclear recep... 29 2.7
AC084158-23|AAP31422.1| 187|Caenorhabditis elegans Hypothetical... 29 2.7
AC084158-22|AAM15623.1| 214|Caenorhabditis elegans Hypothetical... 29 2.7
AC084158-21|AAK68581.1| 271|Caenorhabditis elegans Hypothetical... 29 2.7
AC024776-15|AAK68482.2| 354|Caenorhabditis elegans Nuclear horm... 29 2.7
Z78419-3|CAB01701.2| 1632|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 28 6.2
D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein. 28 6.2
AF159143-1|AAF80367.1| 1632|Caenorhabditis elegans RNA-directed ... 28 6.2
AF003136-7|ABE73336.1| 1539|Caenorhabditis elegans Hypothetical ... 28 6.2
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 28 6.2
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 28 6.2
Z82278-9|CAE17877.1| 323|Caenorhabditis elegans Hypothetical pr... 27 8.2
Z82070-8|CAE17980.1| 323|Caenorhabditis elegans Hypothetical pr... 27 8.2
Z81515-4|CAB04196.1| 739|Caenorhabditis elegans Hypothetical pr... 27 8.2
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 31.5 bits (68), Expect = 0.50
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = +2
Query: 332 NDLMKLSLAMCSVQHLNHSTSTPSCPV--RLTFTKPDFENLHSIRYITRNG 478
ND +L C L H+ S P+ R TF PD + H I +I NG
Sbjct: 110 NDTGELLTTFCETNRLWHTNSMFKKPMHKRWTFVSPDGNHRHEIDHILANG 160
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 31.5 bits (68), Expect = 0.50
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = +2
Query: 332 NDLMKLSLAMCSVQHLNHSTSTPSCPV--RLTFTKPDFENLHSIRYITRNG 478
ND +L C L H+ S P+ R TF PD + H I +I NG
Sbjct: 281 NDTGELLATFCETNRLWHTNSMFKKPMHKRWTFVSPDGNHRHEIDHILANG 331
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 31.5 bits (68), Expect = 0.50
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = +2
Query: 332 NDLMKLSLAMCSVQHLNHSTSTPSCPV--RLTFTKPDFENLHSIRYITRNG 478
ND +L C L H+ S P+ R TF PD + H I +I NG
Sbjct: 20 NDTGELLATFCETNRLWHTNSMFKKPMHKRWTFVSPDGNHRHEIDHILANG 70
>Z81085-3|CAB03115.1| 769|Caenorhabditis elegans Hypothetical
protein F46F3.4 protein.
Length = 769
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +2
Query: 311 KKLQRIINDLMKLSLAMCSVQHLNHSTSTPSCPVRLTFTKPDFENLHSIRYITRN 475
K+ Q+ ++L K++ H + STS+ P +TF+ P FE + +TR+
Sbjct: 325 KENQQKYSELSKMASTDPHSNHSSPSTSSQKAPTLITFSPPSFEQKINSSTMTRD 379
>AF273836-1|AAG15184.1| 362|Caenorhabditis elegans nuclear receptor
NHR-92 protein.
Length = 362
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -1
Query: 251 RGNQFSCHTIRICLSVGTVRKSFQKCPRT 165
RG+++ C + CL V T+R +KC T
Sbjct: 43 RGHEYRCKQMENCLIVSTIRNMCKKCRYT 71
>AC084158-23|AAP31422.1| 187|Caenorhabditis elegans Hypothetical
protein Y69A2AR.7c protein.
Length = 187
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +2
Query: 305 MKKKLQRIINDLMKLSLAMCSVQHLNHSTSTPSCPVR 415
++K QR+ +D+ + L +C +H+NH+ TP P +
Sbjct: 104 LQKMRQRVADDIGEKVLDIC--EHINHNHYTPKMPTK 138
>AC084158-22|AAM15623.1| 214|Caenorhabditis elegans Hypothetical
protein Y69A2AR.7b protein.
Length = 214
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +2
Query: 305 MKKKLQRIINDLMKLSLAMCSVQHLNHSTSTPSCPVR 415
++K QR+ +D+ + L +C +H+NH+ TP P +
Sbjct: 131 LQKMRQRVADDIGEKVLDIC--EHINHNHYTPKMPTK 165
>AC084158-21|AAK68581.1| 271|Caenorhabditis elegans Hypothetical
protein Y69A2AR.7a protein.
Length = 271
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +2
Query: 305 MKKKLQRIINDLMKLSLAMCSVQHLNHSTSTPSCPVR 415
++K QR+ +D+ + L +C +H+NH+ TP P +
Sbjct: 177 LQKMRQRVADDIGEKVLDIC--EHINHNHYTPKMPTK 211
>AC024776-15|AAK68482.2| 354|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 92 protein.
Length = 354
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -1
Query: 251 RGNQFSCHTIRICLSVGTVRKSFQKCPRT 165
RG+++ C + CL V T+R +KC T
Sbjct: 35 RGHEYRCKQMENCLIVSTIRNMCKKCRYT 63
>Z78419-3|CAB01701.2| 1632|Caenorhabditis elegans Hypothetical
protein F26A3.3 protein.
Length = 1632
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = -3
Query: 486 REPPFRVIYLIECRFSKSGLVKVKRTGHEGVLVEWFRCCTEHMASDN 346
RE F + YL+EC S+ +VK + EG+ + + D+
Sbjct: 390 RERKFAITYLLECLISRGAVVKDQILLDEGIWHRFLEVILHYYTKDD 436
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
K08C7.3b protein.
Length = 3672
Score = 27.9 bits (59), Expect = 6.2
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Frame = -2
Query: 562 IDRNADEMKVSLEG*GF-RVKP--WMPVKGTPI 473
I NADE+ VSL+G G+ KP W P K T I
Sbjct: 2890 ITDNADELVVSLDGEGYTSYKPSHWNPRKATKI 2922
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
K08C7.3a protein.
Length = 3704
Score = 27.9 bits (59), Expect = 6.2
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Frame = -2
Query: 562 IDRNADEMKVSLEG*GF-RVKP--WMPVKGTPI 473
I NADE+ VSL+G G+ KP W P K T I
Sbjct: 2890 ITDNADELVVSLDGEGYTSYKPSHWNPRKATKI 2922
>D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein.
Length = 1518
Score = 27.9 bits (59), Expect = 6.2
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Frame = -2
Query: 562 IDRNADEMKVSLEG*GF-RVKP--WMPVKGTPI 473
I NADE+ VSL+G G+ KP W P K T I
Sbjct: 704 ITDNADELVVSLDGEGYTSYKPSHWNPRKATKI 736
>AF159143-1|AAF80367.1| 1632|Caenorhabditis elegans RNA-directed RNA
polymerase relatedEGO-1 protein.
Length = 1632
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = -3
Query: 486 REPPFRVIYLIECRFSKSGLVKVKRTGHEGVLVEWFRCCTEHMASDN 346
RE F + YL+EC S+ +VK + EG+ + + D+
Sbjct: 390 RERKFAITYLLECLISRGAVVKDQILLDEGIWHRFLEVILHYYTKDD 436
>AF003136-7|ABE73336.1| 1539|Caenorhabditis elegans Hypothetical
protein F28B3.1 protein.
Length = 1539
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +2
Query: 314 KLQRIINDLMKLSLAMCSVQHLNHSTSTPSCPVRLTFTKPDFEN 445
++ R I+ + ++ + C++ NH TP V ++ TK FEN
Sbjct: 834 RVLRAIDTIHQVGIYCCALVPANHLPKTPLGGVHVSETKQRFEN 877
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 27.9 bits (59), Expect = 6.2
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Frame = -2
Query: 562 IDRNADEMKVSLEG*GF-RVKP--WMPVKGTPI 473
I NADE+ VSL+G G+ KP W P K T I
Sbjct: 2890 ITDNADELVVSLDGEGYTSYKPSHWNPRKATKI 2922
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 27.9 bits (59), Expect = 6.2
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Frame = -2
Query: 562 IDRNADEMKVSLEG*GF-RVKP--WMPVKGTPI 473
I NADE+ VSL+G G+ KP W P K T I
Sbjct: 2890 ITDNADELVVSLDGEGYTSYKPSHWNPRKATKI 2922
>Z82278-9|CAE17877.1| 323|Caenorhabditis elegans Hypothetical
protein W04E12.9 protein.
Length = 323
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/62 (20%), Positives = 28/62 (45%)
Frame = +2
Query: 74 YYPLMTSYYFPFAQRPDNYNLHSVKNYEAIRFLDIFEKTFVQSLQKGKFESYGKKIDFHD 253
Y P + S + F P ++NL+ + F+ T + + +K K E++ ++ H
Sbjct: 3 YLPSLPSLFLYFYDHPSSHNLYIYLHL----FVQSNTTTIISNFRKQKHENHSSEVSMHQ 58
Query: 254 EK 259
+
Sbjct: 59 HR 60
>Z82070-8|CAE17980.1| 323|Caenorhabditis elegans Hypothetical
protein W04E12.9 protein.
Length = 323
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/62 (20%), Positives = 28/62 (45%)
Frame = +2
Query: 74 YYPLMTSYYFPFAQRPDNYNLHSVKNYEAIRFLDIFEKTFVQSLQKGKFESYGKKIDFHD 253
Y P + S + F P ++NL+ + F+ T + + +K K E++ ++ H
Sbjct: 3 YLPSLPSLFLYFYDHPSSHNLYIYLHL----FVQSNTTTIISNFRKQKHENHSSEVSMHQ 58
Query: 254 EK 259
+
Sbjct: 59 HR 60
>Z81515-4|CAB04196.1| 739|Caenorhabditis elegans Hypothetical
protein F26H11.4 protein.
Length = 739
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +2
Query: 380 NHSTSTPSCPVRLTFTKPDFENLHSIRYITRNGGS 484
N S P CP L F +PD + L + + + G+
Sbjct: 329 NPSLLLPKCPRTLPFCEPDSDTLEKFKQVDKQMGT 363
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,590,275
Number of Sequences: 27780
Number of extensions: 323571
Number of successful extensions: 906
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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