Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_E03
         (620 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g66150.1 68418.m08333 glycosyl hydrolase family 38 protein si...    36   0.016
At3g26720.1 68416.m03341 glycosyl hydrolase family 38 protein si...    33   0.15 
At4g24180.1 68417.m03470 pathogenesis-related thaumatin family p...    31   0.81 
At5g22540.1 68418.m02630 expressed protein contains Pfam profile...    29   1.9  
At5g07980.1 68418.m00928 dentin sialophosphoprotein-related cont...    28   4.3  
At4g09360.1 68417.m01545 disease resistance protein (NBS-LRR cla...    28   5.7  

>At5g66150.1 68418.m08333 glycosyl hydrolase family 38 protein
           similar to lysosomal alpha-mannosidase SP:O09159 from
           [Mus musculus]
          Length = 1047

 Score = 36.3 bits (80), Expect = 0.016
 Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 3/103 (2%)
 Frame = +2

Query: 218 FESYGKKIDFHDEKAINFVGNYWQRTPICMKKKLQRIINDLMKLSLAMCSVQHLNHSTST 397
           F  YG    FH E   ++V    Q  P      ++  +ND +  SL   +V   NH   T
Sbjct: 240 FVHYGPPTGFHYEVTDDYVP--LQDNPRFDGYNIKEAVNDFVNASLVYANVSRGNHVMWT 297

Query: 398 PSCPVRLTFTKPDFENL-HSIRYITRNG--GSLYGHPRLYPEA 517
                +  F +  F  +   I Y+ ++G   +LY  P LY +A
Sbjct: 298 MGDDFQYQFAESWFRQMDRLIHYVNKDGRVNALYSTPSLYVDA 340


>At3g26720.1 68416.m03341 glycosyl hydrolase family 38 protein
           similar to lysosomal alpha-mannosidase GI:3522867 from
           [Homo sapiens]
          Length = 1019

 Score = 33.1 bits (72), Expect = 0.15
 Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 3/88 (3%)
 Frame = +2

Query: 263 INFVGNYWQRTPICMKKKLQRIINDLMKLSLAMCSVQHLNHSTSTPSCPVRLTFTKPDFE 442
           IN V    Q  P+     +Q  +ND +  +LA  +V   NH         R  +    F 
Sbjct: 244 INDVSAPIQDDPLLFDYNVQERVNDFVAAALAQVNVTRTNHIMWLMGTDFRYQYAYSWFR 303

Query: 443 NLHS-IRYITRNG--GSLYGHPRLYPEA 517
            +   I Y+ ++G    LY  P +Y +A
Sbjct: 304 QIDKFIHYVNKDGRLNVLYSTPSIYTDA 331


>At4g24180.1 68417.m03470 pathogenesis-related thaumatin family
           protein similar to SP|P28493 Pathogenesis-related
           protein 5 precursor (PR-5) {Arabidopsis thaliana};
           contains Pfam profile PF00314: Thaumatin family
          Length = 255

 Score = 30.7 bits (66), Expect = 0.81
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 82  GIVTSLNRRVPREFRYGTQAVCKT 11
           G VT LN++ P E R+G+ + CK+
Sbjct: 165 GCVTDLNQKCPTELRFGSGSACKS 188


>At5g22540.1 68418.m02630 expressed protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 440

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 155 EAIRFLDIFEKTFVQSLQKGKFESYGKKIDFHDEKAINFV 274
           EA   LD+  KTFV    + + + +  K  F+D + + FV
Sbjct: 217 EAKHLLDLIRKTFVPVPSQRRIKDHSSKSSFNDHEYLGFV 256


>At5g07980.1 68418.m00928 dentin sialophosphoprotein-related contains
            weak similarity to Swiss-Prot:Q9NZW4 dentin
            sialophosphoprotein precursor [Homo sapiens]
          Length = 1501

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 511  RVKPWMPVKGTPIPGNIPDRMQVLEV 434
            R+ P   V   P+P NIPDR+Q L +
Sbjct: 1476 RINPQRYVTVAPMPQNIPDRVQCLSL 1501


>At4g09360.1 68417.m01545 disease resistance protein (NBS-LRR
           class), putative domain signature NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 853

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +2

Query: 338 LMKLSLAMC-SVQHLNHSTSTPSCPVRLTFTKPDFENLHSIRYITRNGGSLYGH 496
           L+ L L  C ++Q L+   S  S  + L  +  DFE L S+  +  N   LY H
Sbjct: 598 LLALELDNCKNLQALSEQLSHFSNLIHLDLSSHDFEKLKSVEELPLNLKHLYAH 651


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,709,640
Number of Sequences: 28952
Number of extensions: 296006
Number of successful extensions: 756
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)