Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_E02
         (356 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri...   122   9e-29
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila...   115   8e-27
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi...   115   8e-27
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative           115   8e-27
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila...   115   8e-27
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)             113   3e-26
At1g12170.1 68414.m01409 F-box family protein contains F-box dom...    31   0.17 
At5g12460.1 68418.m01464 fringe-related protein similarity to pr...    30   0.39 
At1g07220.1 68414.m00768 expressed protein                             29   1.2  
At3g63100.1 68416.m07087 glycine-rich protein                          28   2.1  
At5g35970.1 68418.m04332 DNA-binding protein, putative similar t...    27   2.8  
At2g40650.1 68415.m05016 pre-mRNA splicing factor PRP38 family p...    27   2.8  
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar...    27   4.9  
At2g01140.1 68415.m00023 fructose-bisphosphate aldolase, putativ...    26   8.5  

>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
           ribosomal protein S2 - Arabidopsis thaliana,
           SWISSPROT:RS2_ARATH
          Length = 276

 Score =  122 bits (293), Expect = 9e-29
 Identities = 54/71 (76%), Positives = 65/71 (91%)
 Frame = +3

Query: 144 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 323
           ++++WVPVTKLGRLV+EGKI K+E IYL SLP+KE++IID  +GPSL DEV+KIMPVQKQ
Sbjct: 41  EEEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVKEYQIIDLLVGPSLKDEVMKIMPVQKQ 100

Query: 324 TRAGQRTRFKA 356
           TRAGQRTRFKA
Sbjct: 101 TRAGQRTRFKA 111


>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
           to ribosomal protein S2 GI:430711 from [Drosophila
           melanogaster]
          Length = 284

 Score =  115 bits (277), Expect = 8e-27
 Identities = 52/71 (73%), Positives = 62/71 (87%)
 Frame = +3

Query: 144 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 323
           ++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID  +GP+L DEV+KIMPVQKQ
Sbjct: 49  EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108

Query: 324 TRAGQRTRFKA 356
           TRAGQRTRFKA
Sbjct: 109 TRAGQRTRFKA 119


>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
           to ribosomal protein S2 GI:939717 from [Urechis caupo]
          Length = 284

 Score =  115 bits (277), Expect = 8e-27
 Identities = 52/71 (73%), Positives = 62/71 (87%)
 Frame = +3

Query: 144 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 323
           ++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID  +GP+L DEV+KIMPVQKQ
Sbjct: 49  EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108

Query: 324 TRAGQRTRFKA 356
           TRAGQRTRFKA
Sbjct: 109 TRAGQRTRFKA 119


>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 
          Length = 284

 Score =  115 bits (277), Expect = 8e-27
 Identities = 52/71 (73%), Positives = 62/71 (87%)
 Frame = +3

Query: 144 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 323
           ++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID  +GP+L DEV+KIMPVQKQ
Sbjct: 49  EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108

Query: 324 TRAGQRTRFKA 356
           TRAGQRTRFKA
Sbjct: 109 TRAGQRTRFKA 119


>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
           to ribosomal protein S2 GI:939717 from (Urechis caupo)
          Length = 284

 Score =  115 bits (277), Expect = 8e-27
 Identities = 52/71 (73%), Positives = 62/71 (87%)
 Frame = +3

Query: 144 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 323
           ++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID  +GP+L DEV+KIMPVQKQ
Sbjct: 49  EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108

Query: 324 TRAGQRTRFKA 356
           TRAGQRTRFKA
Sbjct: 109 TRAGQRTRFKA 119


>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
          Length = 285

 Score =  113 bits (272), Expect = 3e-26
 Identities = 50/71 (70%), Positives = 62/71 (87%)
 Frame = +3

Query: 144 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 323
           ++++WVPVTKLGRLV  G I ++E IYL SLP+KE++IID  +GP+L DEV+KIMPVQKQ
Sbjct: 50  EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMPVQKQ 109

Query: 324 TRAGQRTRFKA 356
           TRAGQRTRFKA
Sbjct: 110 TRAGQRTRFKA 120


>At1g12170.1 68414.m01409 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 364

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 32  WTWRFPRRLWIPWWRQRSW 88
           W+WR    +W PW RQ  W
Sbjct: 107 WSWRKKAAIWNPWLRQTKW 125


>At5g12460.1 68418.m01464 fringe-related protein similarity to
           predicted proteins + similar to hypothetical protein
           GB:AAC23643 [Arabidopsis thaliana] + weak similarity to
           Fringe [Schistocerca gregaria](GI:6573138);Fringe
           encodes an extracellular protein that regulates Notch
           signalling.
          Length = 415

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
 Frame = +2

Query: 5   NNGGRSSSRWTWRFPRRLWIPWWRQRSWRPTWSWSRTRA---RPWPWQGRP 148
           ++   SSS  TWR+ R    PWWR    +      R       PWP Q  P
Sbjct: 15  SSSSSSSSTKTWRYRRGYIEPWWRPNITKGYVFLERPPGPDLLPWPQQSPP 65


>At1g07220.1 68414.m00768 expressed protein
          Length = 507

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +2

Query: 98  WSWSRTRARPWPWQGRPERVGASHQAW 178
           W WS T  RPW  +    + G+  ++W
Sbjct: 235 WGWSETNLRPWEEEFGDIKQGSRRRSW 261


>At3g63100.1 68416.m07087 glycine-rich protein 
          Length = 199

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = -3

Query: 135 HGHGRARV-RDHDHVGRHDLCRHHGIQSRRGNR 40
           HGHG  R  RDH H       R HG    RG+R
Sbjct: 102 HGHGHRRHGRDHRHGRDRGHHRGHGHHHHRGHR 134



 Score = 26.2 bits (55), Expect = 6.4
 Identities = 15/38 (39%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
 Frame = -3

Query: 135 HGHGRARVRDHDH-VGRHDLCRHHGIQ--SRRGNRHVH 31
           HGHGR     H H   RH     HG      RG+ H H
Sbjct: 92  HGHGRGHGHGHGHGHRRHGRDHRHGRDRGHHRGHGHHH 129


>At5g35970.1 68418.m04332 DNA-binding protein, putative similar to
           SWISS-PROT:Q60560 DNA-binding protein SMUBP-2
           (Immunoglobulin MU binding protein 2, SMUBP-2)
           [Mesocricetus auratus]
          Length = 961

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 334 PARVCFCTGMIFRTSSLSEGPRKKSMISNSL 242
           P R  FC+G+   +S   + PR+KS +S+ L
Sbjct: 43  PTRKVFCSGVNGGSSVTKKKPRRKSNVSDKL 73


>At2g40650.1 68415.m05016 pre-mRNA splicing factor PRP38 family
           protein contains Pfam profile PF03371: PRP38 family
          Length = 355

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 13/32 (40%), Positives = 13/32 (40%)
 Frame = -3

Query: 135 HGHGRARVRDHDHVGRHDLCRHHGIQSRRGNR 40
           HG  R R RD DH    D  R  G    R  R
Sbjct: 257 HGRDRDRERDRDHYRERDRDRERGRDRERDRR 288


>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
            RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
            contains Pfam profiles PF00270: DEAD/DEAH box helicase,
            PF00271: Helicase conserved C-terminal domain, PF00397:
            WW domain
          Length = 1088

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +2

Query: 5    NNGGRSSSRWTWRF-PRRLWIPWWRQRSWRPTWSWSRTRARPW 130
            N  GRS SR      PRR    + R RS   ++S SR+R+R W
Sbjct: 949  NRRGRSRSRSPDLVRPRRRSSSYSRSRSRSGSYSRSRSRSRSW 991


>At2g01140.1 68415.m00023 fructose-bisphosphate aldolase, putative
           similar to plastidic aldolase NPALDP1 from Nicotiana
           paniculata [GI:4827251]; contains Pfam profile PF00274
           Fructose-bisphosphate aldolase class-I
          Length = 391

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +2

Query: 86  WRPTWSWSRTRARPW--PWQGRPERVGASHQA 175
           W  ++S++R         WQG+PE++ AS +A
Sbjct: 324 WHVSFSYARALQNSVLRTWQGKPEKIEASQKA 355


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,752,818
Number of Sequences: 28952
Number of extensions: 132390
Number of successful extensions: 453
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 459356736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)