Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_E01
(372 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0131 + 27898028-27898042,27898159-27898274,27898361-278984... 51 3e-07
01_06_0180 - 27260099-27260440,27261236-27261350,27261403-272615... 51 3e-07
01_06_0730 - 31552747-31553088,31553583-31553646,31553743-315538... 50 6e-07
04_03_0819 + 20018496-20019487,20019587-20019721,20019834-200199... 31 0.38
03_02_0327 + 7481822-7481930,7482604-7482726,7482970-7483061,748... 29 1.2
01_01_0963 - 7577207-7577992,7578506-7578622,7578711-7578921,757... 28 2.0
01_06_1122 - 34668101-34668229,34668990-34669048,34669159-34669264 27 4.7
05_05_0266 - 23694466-23696787,23696885-23697187 27 6.2
07_03_0945 - 22791754-22791863,22792295-22792367,22792457-227925... 26 8.2
04_04_1156 - 31319747-31320085,31320556-31320706,31320795-313210... 26 8.2
>05_07_0131 +
27898028-27898042,27898159-27898274,27898361-27898424,
27899450-27899791
Length = 178
Score = 50.8 bits (116), Expect = 3e-07
Identities = 26/61 (42%), Positives = 35/61 (57%)
Frame = +3
Query: 150 VKKTTGVKLVSSRGNSRKESC*D*NFGIWLRYESRSGVHNMYREYRELEW*VCSHQCYRD 329
VKK+ G L + R + N+GIWLRY+SR+G HNMY+EYR+ Q Y +
Sbjct: 53 VKKSNGQMLAINEIFERNPTTIK-NYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTE 111
Query: 330 M 332
M
Sbjct: 112 M 112
Score = 29.5 bits (63), Expect = 0.88
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = +2
Query: 92 SDPIVAKSRFWYFLRQLXERQK 157
++ + AKS+FWYFLR+L + +K
Sbjct: 34 TNEVRAKSKFWYFLRKLKKVKK 55
>01_06_0180 -
27260099-27260440,27261236-27261350,27261403-27261518,
27261594-27261608
Length = 195
Score = 50.8 bits (116), Expect = 3e-07
Identities = 26/61 (42%), Positives = 35/61 (57%)
Frame = +3
Query: 150 VKKTTGVKLVSSRGNSRKESC*D*NFGIWLRYESRSGVHNMYREYRELEW*VCSHQCYRD 329
VKK+ G L + R + N+GIWLRY+SR+G HNMY+EYR+ Q Y +
Sbjct: 70 VKKSNGQMLAINEIFERNPTTIK-NYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTE 128
Query: 330 M 332
M
Sbjct: 129 M 129
>01_06_0730 -
31552747-31553088,31553583-31553646,31553743-31553858,
31553964-31553978
Length = 178
Score = 50.0 bits (114), Expect = 6e-07
Identities = 20/37 (54%), Positives = 26/37 (70%)
Frame = +3
Query: 222 NFGIWLRYESRSGVHNMYREYRELEW*VCSHQCYRDM 332
N+GIWLRY+SR+G HNMY+EYR+ Q Y +M
Sbjct: 76 NYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEM 112
Score = 29.5 bits (63), Expect = 0.88
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = +2
Query: 92 SDPIVAKSRFWYFLRQLXERQK 157
++ + AKS+FWYFLR+L + +K
Sbjct: 34 TNEVRAKSKFWYFLRKLKKVKK 55
>04_03_0819 +
20018496-20019487,20019587-20019721,20019834-20019978,
20020135-20020416,20020649-20020910,20021028-20021224,
20021315-20021425,20022341-20022392,20022442-20022584,
20023121-20023210,20023300-20023800,20024108-20024176,
20024866-20025011,20025475-20025530,20026140-20026286,
20027405-20027530,20027608-20027876,20028026-20028127
Length = 1274
Score = 30.7 bits (66), Expect = 0.38
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = -3
Query: 157 FLTFXQLPQEIPETRFCHNRIREKSSFCIEEALARSPKGARPMTILFQSPSP 2
FL + ++PQ +P T CHN +E+ E+ +P G+ P +L P
Sbjct: 332 FLDYCKVPQNLPVTIACHN--KERCWSASRESRTAAPFGSYPNLLLVYPQFP 381
>03_02_0327 +
7481822-7481930,7482604-7482726,7482970-7483061,
7483144-7483285,7483625-7483929,7484120-7484173,
7484253-7484380,7484536-7484680,7484929-7484934
Length = 367
Score = 29.1 bits (62), Expect = 1.2
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +1
Query: 214 KIRTLVSGCVTSLALVSTICTVNTVNLSGRCAVISAIEIWELDTEL 351
++R LV G +C+V T NL CA+ +++ W+ EL
Sbjct: 27 QVRVLVVGDSVLQLFTKKVCSVLT-NLGWNCAIFLSLKTWDTKEEL 71
>01_01_0963 -
7577207-7577992,7578506-7578622,7578711-7578921,
7579406-7579442,7580781-7580902,7581292-7581500
Length = 493
Score = 28.3 bits (60), Expect = 2.0
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -1
Query: 372 MILLNVHELCV*LPYLYSTDDCTPTTQVHGIHGTY--CGHQSE 250
M+LL+ LC+ ++S T +V GIH Y C H SE
Sbjct: 293 MLLLHGERLCMVADAVFSGSGVTIAGKVSGIHWHYYTCSHPSE 335
>01_06_1122 - 34668101-34668229,34668990-34669048,34669159-34669264
Length = 97
Score = 27.1 bits (57), Expect = 4.7
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +1
Query: 202 KSPVKIRTLVSGCVTSLALVSTICTVNTVNLSGRCAVISAIE 327
K+P+ + ++ G + L LVS++ +V+L A +SA+E
Sbjct: 10 KAPLLVLVILCGLLLLLPLVSSVPLSRSVSLRNHQASVSALE 51
>05_05_0266 - 23694466-23696787,23696885-23697187
Length = 874
Score = 26.6 bits (56), Expect = 6.2
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +1
Query: 196 PEKSPVKIRTLVS-GCVTSLALVSTICTVNTVNLSGRCAVISAI 324
PE+S + + T+ G + L LV VNT+ SG+ A+I A+
Sbjct: 123 PERSLLTLETVAHLGLLYFLFLVGLEMDVNTIRRSGKKALIIAV 166
>07_03_0945 -
22791754-22791863,22792295-22792367,22792457-22792552,
22793268-22793331,22793957-22794008,22794525-22794622,
22795108-22795166,22795981-22796013
Length = 194
Score = 26.2 bits (55), Expect = 8.2
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +3
Query: 231 IWLRYESRSGVHNMYREY 284
+WL++ S SG ++YR Y
Sbjct: 94 VWLQFPSNSGAKHVYRRY 111
>04_04_1156 -
31319747-31320085,31320556-31320706,31320795-31321026,
31321121-31321331,31321646-31321764,31321835-31322032,
31322163-31322364,31322456-31322832,31322937-31323007,
31326264-31326329,31326414-31326479,31326761-31326835,
31326944-31327018,31327115-31327186,31327683-31327904,
31328012-31328083,31328425-31328496,31329410-31329481,
31329716-31329896,31332132-31332237
Length = 992
Score = 26.2 bits (55), Expect = 8.2
Identities = 12/39 (30%), Positives = 26/39 (66%)
Frame = +1
Query: 211 VKIRTLVSGCVTSLALVSTICTVNTVNLSGRCAVISAIE 327
++I + SG +SLA +S++ ++NT+ L C + +++E
Sbjct: 266 LRIGDIASGISSSLAFISSMTSLNTLILR-NCMISNSLE 303
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,953,205
Number of Sequences: 37544
Number of extensions: 160041
Number of successful extensions: 431
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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