BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= I10A02NGRL0002_E01 (372 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_19131| Best HMM Match : No HMM Matches (HMM E-Value=.) 63 8e-11 SB_3589| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.69 SB_13281| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.2 SB_40645| Best HMM Match : zf-C2H2 (HMM E-Value=3.30006e-42) 28 2.8 SB_20654| Best HMM Match : Helicase_C (HMM E-Value=2.3e-21) 28 2.8 SB_33339| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.15) 27 3.7 SB_1872| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.7 SB_39164| Best HMM Match : RNB (HMM E-Value=0) 27 4.9 SB_59517| Best HMM Match : Cu-oxidase_2 (HMM E-Value=1e-06) 26 8.5 SB_35530| Best HMM Match : Pinin_SDK_memA (HMM E-Value=2.4) 26 8.5 SB_53046| Best HMM Match : Cu-oxidase_3 (HMM E-Value=2.8e-31) 26 8.5 SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.5 SB_14386| Best HMM Match : Ion_trans_2 (HMM E-Value=2.4e-11) 26 8.5 >SB_19131| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 456 Score = 62.9 bits (146), Expect = 8e-11 Identities = 34/73 (46%), Positives = 43/73 (58%) Frame = +3 Query: 150 VKKTTGVKLVSSRGNSRKESC*D*NFGIWLRYESRSGVHNMYREYRELEW*VCSHQCYRD 329 +KK+ G ++VS + K+ NFGIWLRY+SRSG HNMYREYR+L CYRD Sbjct: 254 MKKSQG-EIVSCQQIYEKKPLQIKNFGIWLRYDSRSGTHNMYREYRDLTVSGAVTACYRD 312 Query: 330 MGXXXXXXXXSIR 368 M SI+ Sbjct: 313 MAARHRARGYSIQ 325 Score = 34.7 bits (76), Expect = 0.024 Identities = 19/48 (39%), Positives = 28/48 (58%) Frame = +2 Query: 68 LYTK*GFLSDPIVAKSRFWYFLRQLXERQKDYWXEIGILKGKFQKRVL 211 LY F D +VA+S+FWYF+ QL +R K EI + ++K+ L Sbjct: 227 LYKMRIFAPDDVVARSKFWYFISQL-KRMKKSQGEIVSCQQIYEKKPL 273 >SB_3589| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 179 Score = 29.9 bits (64), Expect = 0.69 Identities = 11/34 (32%), Positives = 21/34 (61%) Frame = -1 Query: 300 TTQVHGIHGTYCGHQSETRNATRYQSSNLNRTLF 199 T Q+H T+C HQ+++ + T +Q+ + + T F Sbjct: 38 TLQIHQTDSTHCTHQTDSAHCTDHQTDSAHYTDF 71 >SB_13281| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 477 Score = 29.1 bits (62), Expect = 1.2 Identities = 17/54 (31%), Positives = 26/54 (48%) Frame = -1 Query: 282 IHGTYCGHQSETRNATRYQSSNLNRTLFWNFPLRIPISXQ*SF*RSXNCLKKYQ 121 +H + HQ QSS+LN+ L W +++P+ Q SF R N Y+ Sbjct: 358 VHEKHRPHQCNECGKRFSQSSSLNKHLRWRETVQVPLLQQ-SFHRFVNSTNPYK 410 >SB_40645| Best HMM Match : zf-C2H2 (HMM E-Value=3.30006e-42) Length = 554 Score = 27.9 bits (59), Expect = 2.8 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 1/50 (2%) Frame = -3 Query: 148 FXQLPQEIPET-RFCHNRIREKSSFCIEEALARSPKGARPMTILFQSPSP 2 F +LP E+P + C S C EE LA P A P+ L SPSP Sbjct: 39 FTELPAELPASFTMC--------SPCTEEDLAVEPDIAFPLGCLVMSPSP 80 >SB_20654| Best HMM Match : Helicase_C (HMM E-Value=2.3e-21) Length = 1728 Score = 27.9 bits (59), Expect = 2.8 Identities = 14/53 (26%), Positives = 25/53 (47%) Frame = +1 Query: 175 WYPQGEIPEKSPVKIRTLVSGCVTSLALVSTICTVNTVNLSGRCAVISAIEIW 333 WYPQG++ +P K LV+ + + + I +T ++G A +W Sbjct: 154 WYPQGKVVFMAPTK--PLVAQQIEACYKIMGIPQTDTAEMTGNMAPTKRENLW 204 >SB_33339| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.15) Length = 1224 Score = 27.5 bits (58), Expect = 3.7 Identities = 11/33 (33%), Positives = 17/33 (51%) Frame = -1 Query: 300 TTQVHGIHGTYCGHQSETRNATRYQSSNLNRTL 202 T VH I T+ GH+ + A Y +S+ N + Sbjct: 543 TASVHVIESTFTGHRYDGNGAVLYLASSFNAVI 575 >SB_1872| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1801 Score = 27.5 bits (58), Expect = 3.7 Identities = 10/36 (27%), Positives = 21/36 (58%) Frame = +1 Query: 205 SPVKIRTLVSGCVTSLALVSTICTVNTVNLSGRCAV 312 SP+ TL++ C++ L+ ++ IC + T + C + Sbjct: 257 SPLARTTLLNRCISDLSFLAQICEMVTSGVESGCPI 292 >SB_39164| Best HMM Match : RNB (HMM E-Value=0) Length = 597 Score = 27.1 bits (57), Expect = 4.9 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%) Frame = -3 Query: 142 QLPQEIPETRFCHNR-IREKSSFCIEEALAR 53 + P IPET F H R R++ F I+ AR Sbjct: 329 ETPWSIPETEFAHRRDFRDECVFTIDPLTAR 359 >SB_59517| Best HMM Match : Cu-oxidase_2 (HMM E-Value=1e-06) Length = 203 Score = 26.2 bits (55), Expect = 8.5 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%) Frame = -3 Query: 190 PLEDTNFTPVVFLTFXQLPQEIPETRF--CH--NRIREKSSFCIEEALARSP 47 PL+DT P T +L +E P F CH N + E + + E+ A+ P Sbjct: 49 PLKDTVVVPSFGYTVVRLSKENPGYWFVHCHVGNHMTEGMALILNESFAKQP 100 >SB_35530| Best HMM Match : Pinin_SDK_memA (HMM E-Value=2.4) Length = 170 Score = 26.2 bits (55), Expect = 8.5 Identities = 11/21 (52%), Positives = 15/21 (71%) Frame = +2 Query: 5 RRRLKEYSHRPSSLRRASQSL 67 RRR+KE+ RP +L +QSL Sbjct: 17 RRRMKEHKTRPKALAALNQSL 37 >SB_53046| Best HMM Match : Cu-oxidase_3 (HMM E-Value=2.8e-31) Length = 570 Score = 26.2 bits (55), Expect = 8.5 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%) Frame = -3 Query: 190 PLEDTNFTPVVFLTFXQLPQEIPETRF--CH--NRIREKSSFCIEEALARSP 47 PL+DT P T +L +E P F CH N + E + + E+ A+ P Sbjct: 416 PLKDTVVVPSFGYTVVRLSKENPGYWFVHCHVGNHMTEGMALILNESFAKQP 467 >SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1019 Score = 26.2 bits (55), Expect = 8.5 Identities = 11/21 (52%), Positives = 15/21 (71%) Frame = +2 Query: 5 RRRLKEYSHRPSSLRRASQSL 67 RRR+KE+ RP +L +QSL Sbjct: 789 RRRMKEHKTRPKALAALNQSL 809 >SB_14386| Best HMM Match : Ion_trans_2 (HMM E-Value=2.4e-11) Length = 556 Score = 26.2 bits (55), Expect = 8.5 Identities = 12/42 (28%), Positives = 19/42 (45%) Frame = -3 Query: 157 FLTFXQLPQEIPETRFCHNRIREKSSFCIEEALARSPKGARP 32 + T Q P+T N++ SS +E A+ R+P P Sbjct: 59 YFTKAQFQCNCPQTNLLFNKLNVSSSSAMEIAIRRTPYNTPP 100 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,441,149 Number of Sequences: 59808 Number of extensions: 190649 Number of successful extensions: 543 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 468 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 543 length of database: 16,821,457 effective HSP length: 74 effective length of database: 12,395,665 effective search space used: 607387585 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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