Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_E01
         (372 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038611-9|AAB92041.2|  180|Caenorhabditis elegans Ribosomal pro...    58   2e-09
AL031630-22|CAA20995.2|  454|Caenorhabditis elegans Hypothetical...    29   1.4  
AF025453-7|AAK31401.1|  253|Caenorhabditis elegans Hypothetical ...    27   3.2  
Z30423-10|CAA83014.1|  216|Caenorhabditis elegans Hypothetical p...    27   5.7  
Z81081-1|CAB03090.1|  464|Caenorhabditis elegans Hypothetical pr...    26   9.9  
Z71267-2|CAA95849.1|  311|Caenorhabditis elegans Hypothetical pr...    26   9.9  
AF067618-6|AAC19197.2| 1015|Caenorhabditis elegans Hypothetical ...    26   9.9  

>AF038611-9|AAB92041.2|  180|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 20 protein.
          Length = 180

 Score = 58.0 bits (134), Expect = 2e-09
 Identities = 23/38 (60%), Positives = 29/38 (76%)
 Frame = +3

Query: 222 NFGIWLRYESRSGVHNMYREYRELEW*VCSHQCYRDMG 335
           N+G+WL+Y+SR+G HNMYREYR+        QCYRDMG
Sbjct: 80  NYGVWLKYDSRTGHHNMYREYRDTTVAGAVTQCYRDMG 117



 Score = 32.7 bits (71), Expect = 0.086
 Identities = 17/39 (43%), Positives = 24/39 (61%)
 Frame = +2

Query: 86  FLSDPIVAKSRFWYFLRQLXERQKDYWXEIGILKGKFQK 202
           F ++ ++AKSRFWYF+  L  R K    EI  +K  F+K
Sbjct: 36  FATNHVIAKSRFWYFVSML-RRVKKANGEILSIKQVFEK 73


>AL031630-22|CAA20995.2|  454|Caenorhabditis elegans Hypothetical
           protein Y38H6C.17 protein.
          Length = 454

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +1

Query: 85  ISL*SYCGKISFLVFLEAVXRTSKRLLX*NWYPQGEIPEKSPVKIRTLVSG 237
           I+  S CG +   +   A+   ++ LL   WYP  E+P  + V+  +L +G
Sbjct: 192 ITFLSLCGNV---IIFAAIALITQELLSHTWYPTWELPSITGVEGVSLAAG 239


>AF025453-7|AAK31401.1|  253|Caenorhabditis elegans Hypothetical
           protein C08F1.6 protein.
          Length = 253

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 116 RFWYFLRQLXERQKDYWXEIGILKGKFQKRVL 211
           RFWY + +  E+  + W  +GI++GK +  VL
Sbjct: 221 RFWYGVCKWNEKLGE-WEHLGIIRGKTKSLVL 251


>Z30423-10|CAA83014.1|  216|Caenorhabditis elegans Hypothetical
           protein T20G5.12 protein.
          Length = 216

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -3

Query: 160 VFLTFXQLPQE-IPETRFCHNRIREKSSFCIEEALARSPKGARPMTILFQSP 8
           +F    + P E +PE +FC  + ++ S  C +  +  +  G++ +T   Q+P
Sbjct: 116 MFFGSSECPIEFLPEMQFCAAQGKDHSQCCSQSQVDATTAGSKCLTFCDQTP 167


>Z81081-1|CAB03090.1|  464|Caenorhabditis elegans Hypothetical
           protein F42D1.2 protein.
          Length = 464

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 121 ETRFCHNRIREKSSFCI 71
           +  FC N IRE+S FC+
Sbjct: 389 DVSFCQNLIREESVFCL 405


>Z71267-2|CAA95849.1|  311|Caenorhabditis elegans Hypothetical
           protein W01A8.5 protein.
          Length = 311

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -2

Query: 269 IVDT-RARLVTQPDTKVLILTGLFSGISP*GYQF 171
           ++DT      T PDT+  IL G+FS      Y+F
Sbjct: 228 VLDTIETEATTTPDTEKSILAGIFSECQQGNYRF 261


>AF067618-6|AAC19197.2| 1015|Caenorhabditis elegans Hypothetical
           protein F56H1.5 protein.
          Length = 1015

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 20/50 (40%), Positives = 22/50 (44%)
 Frame = -3

Query: 199 LEFPLEDTNFTPVVFLTFXQLPQEIPETRFCHNRIREKSSFCIEEALARS 50
           L +PLE   F P+ F     LP   P T   H RIR  SS  I     RS
Sbjct: 369 LPYPLETRRF-PIDF----PLPTATPSTPGGHGRIRNSSSINISFDNGRS 413


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,864,135
Number of Sequences: 27780
Number of extensions: 144825
Number of successful extensions: 490
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)