Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_E01
         (372 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g34480.1 68415.m04233 60S ribosomal protein L18A (RPL18aB)          51   2e-07
At1g29965.1 68414.m03664 60S ribosomal protein L18A  (RPL18aA) JRW     51   2e-07
At3g14600.1 68416.m01849 60S ribosomal protein L18A (RPL18aC) si...    49   1e-06
At1g32850.1 68414.m04048 ubiquitin carboxyl-terminal hydrolase f...    27   3.0  
At3g53860.1 68416.m05950 expressed protein several hypothetical ...    27   4.0  
At4g39530.1 68417.m05589 pentatricopeptide (PPR) repeat-containi...    26   9.2  
At3g52140.1 68416.m05723 tetratricopeptide repeat (TPR)-containi...    26   9.2  

>At2g34480.1 68415.m04233 60S ribosomal protein L18A (RPL18aB)
          Length = 178

 Score = 51.2 bits (117), Expect = 2e-07
 Identities = 21/37 (56%), Positives = 26/37 (70%)
 Frame = +3

Query: 222 NFGIWLRYESRSGVHNMYREYRELEW*VCSHQCYRDM 332
           NFGIWLRY+SR+G HNMY+EYR+        Q Y +M
Sbjct: 76  NFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEM 112



 Score = 29.9 bits (64), Expect = 0.56
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = +2

Query: 59  QSLLYTK*GFLSDPIVAKSRFWYFLRQLXERQK 157
           Q  +Y    + ++ + AKS+FWYFLR+L + +K
Sbjct: 23  QPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKK 55


>At1g29965.1 68414.m03664 60S ribosomal protein L18A  (RPL18aA) JRW
          Length = 178

 Score = 51.2 bits (117), Expect = 2e-07
 Identities = 21/37 (56%), Positives = 26/37 (70%)
 Frame = +3

Query: 222 NFGIWLRYESRSGVHNMYREYRELEW*VCSHQCYRDM 332
           NFGIWLRY+SR+G HNMY+EYR+        Q Y +M
Sbjct: 76  NFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEM 112



 Score = 28.7 bits (61), Expect = 1.3
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +2

Query: 11  RLKEYS--HRPSSLRRASQSLLYTK*GFLSDPIVAKSRFWYFLRQLXERQK 157
           RL +Y    R     +  Q  +Y    + ++ ++AKS+FWY+LR+  + +K
Sbjct: 5   RLHQYQVVGRALPTEKDEQPKIYRMKLWATNEVLAKSKFWYYLRRQKKVKK 55


>At3g14600.1 68416.m01849 60S ribosomal protein L18A (RPL18aC)
           similar to GB:CAA08791 from [Podocoryne carnea]
          Length = 178

 Score = 48.8 bits (111), Expect = 1e-06
 Identities = 20/37 (54%), Positives = 26/37 (70%)
 Frame = +3

Query: 222 NFGIWLRYESRSGVHNMYREYRELEW*VCSHQCYRDM 332
           N+GIWLRY+SR+G HNMY+EYR+        Q Y +M
Sbjct: 76  NYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEM 112



 Score = 29.1 bits (62), Expect = 0.99
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = +2

Query: 101 IVAKSRFWYFLRQLXERQK 157
           + AKS+FWYF+R+L + +K
Sbjct: 37  VCAKSKFWYFMRKLKKVKK 55


>At1g32850.1 68414.m04048 ubiquitin carboxyl-terminal hydrolase
           family protein similar to ubiquitin-specific protease
           UBP5 [Arabidopsis thaliana] GI:6648604; contains Pfam
           profile PF00443: Ubiquitin carboxyl-terminal hydrolase
          Length = 892

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +1

Query: 205 SPVKIRTLVSGCVTSLALVSTICTVNTVNLSGRCAVISAIEIWELDTE 348
           S   I T +SG ++ L  V   C VN+ N +G     S+  I   DTE
Sbjct: 611 SGTDIATSISGLLSPLRRVHMSCVVNSGNENGHVPDESSRSILSRDTE 658


>At3g53860.1 68416.m05950 expressed protein several hypothetical
           proteins -  Arabidopsis thaliana
          Length = 281

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +2

Query: 110 KSRFWYFLRQLXERQKDYWXEIGILKGK 193
           K+ +W  +  L  + +DYW + G+ + K
Sbjct: 95  KNHYWALMEDLKAQHRDYWCKYGVSQFK 122


>At4g39530.1 68417.m05589 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 834

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 193 IPEKSPVKIRTLVSGCV 243
           +PEKS V   T++SGCV
Sbjct: 209 LPEKSTVTWTTMISGCV 225


>At3g52140.1 68416.m05723 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515: TPR Domain
          Length = 1403

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 124 PETRFCHNRIREKSSFCIEEALARS 50
           PE+RFC  R    +SFC  E+L +S
Sbjct: 672 PESRFCVLRPELITSFCQAESLEKS 696


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,468,823
Number of Sequences: 28952
Number of extensions: 137621
Number of successful extensions: 372
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 497853200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)